Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02772 ATGGCTGCCGCCGGCGAGATTTTCCGGTCGAATTTGACGGAATTGTTGGAGGAATCGCATTCAGGTGCTGATGAATTGCACGTGCTAGCTGTTGATGATAGTCTTGTTGATCGTAAAGTCATTGAACGTTTGTTGAAGATTTCTTCATGCAAAGTTACGGTTGTGGAGAGTGCAAGAAGAGCTCTTCAGTATTTGGGATTGGATGAAGATGGAGAGAACAGTGATATTGGATTTGATGGTGTGAAGGTTAATTTGATAATGACTGATTATTCGATGCCAGGGATGACAGGATATGAACTATTGAAGAAAATCAAGCAGGAGTCTTCTGTTTTTAGGGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTAACTCGAATTGATAGGTGCCTCGAGGAAGGAGCAGAGGATTTTCTATTGAAGCCAGTCAAGTTGTCAGATGTAAGACGCTTGAAAGATTTTATCATGAGAGGCGAAGTGAAGGATGGTAAGAAAAATTCACTCAAACGAAGGCGATCATCAGATGATTGCAGTCCATCTCTATCAACGACATTCTCACCAATGCGTCATTTGTGCGATCCACCATCATCAGTGTTCTCGCCACTCTCACCATCCACATTATCCTCCAAGAAATCTAGACTGTGA 648 0.4259 MAAAGEIFRSNLTELLEESHSGADELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQYLGLDEDGENSDIGFDGVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKDGKKNSLKRRRSSDDCSPSLSTTFSPMRHLCDPPSSVFSPLSPSTLSSKKSRL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02772 215 ProSiteProfiles Response regulatory domain profile. 27 157 IPR001789 GO:0000160
Trre16g02772 215 MobiDBLite consensus disorder prediction 166 185 - -
Trre16g02772 215 SMART REC_2 26 153 IPR001789 GO:0000160
Trre16g02772 215 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 169 IPR045279 GO:0009736
Trre16g02772 215 Gene3D - 26 187 - -
Trre16g02772 215 CDD REC_typeA_ARR 28 152 - -
Trre16g02772 215 SUPERFAMILY CheY-like 25 152 IPR011006 -
Trre16g02772 215 Pfam Response regulator receiver domain 28 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02772 Trre-Chr16 23358165 23359603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02772 5 182 Response Regulator Gene Family AT3G48100 65.000 1.00e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g02772 Response_reg 1.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02772 K14492 - gmx:100527518 292.352