Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02771 ATGGCTGCCGCCGGCGAGATTTTCCGGTCGAATTTGACGGAATTGTTGGAGGAATCGCATTCAGGTGCTGATGAATTGCACGTGCTAGCTGTTGATGATAGTCTTGTTGATCGTAAAGTCATTGAACGTTTGTTGAAGATTTCTTCATGCAAAGTTACGGTTGTGGAGAGTGCAAGAAGAGCTCTTCAGTATTTGGGATTGGATGAAGATGGAGAGAACAGTGATATTGGATTTGATGGTGTGAAGGTTAATTTGATAATGACTGATTATTCGATGCCAGGGATGACAGGATATGAACTATTGAAGAAAATCAAGGAGTCTTCTGTTTTTAGGGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTAACTCGAATTGATAGGTGCCTCGAGGAAGGAGCAGAGGATTTTCTATTGAAGCCAGTCAAGTTGTCAGATGTAAGACGCTTGAAAGATTTTATCATGAGAGGCGAAGTGAAGGATGGTAAGAAAAATTCACTCAAACGAAGGCGATCATCAGATGATTGCAGTCCATCTCTATCAACGACATTCTCACCAATGCGTCATTTGTGCGATCCACCATCATCAGTGTTCTCGCCACTCTCACCATCCACATTATCCTCCAAGAAATCTAGACTGTGA 645 0.4248 MAAAGEIFRSNLTELLEESHSGADELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQYLGLDEDGENSDIGFDGVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKDGKKNSLKRRRSSDDCSPSLSTTFSPMRHLCDPPSSVFSPLSPSTLSSKKSRL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02771 214 Pfam Response regulator receiver domain 28 149 IPR001789 GO:0000160
Trre16g02771 214 Gene3D - 26 186 - -
Trre16g02771 214 ProSiteProfiles Response regulatory domain profile. 27 156 IPR001789 GO:0000160
Trre16g02771 214 SMART REC_2 26 152 IPR001789 GO:0000160
Trre16g02771 214 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 168 IPR045279 GO:0009736
Trre16g02771 214 CDD REC_typeA_ARR 28 151 - -
Trre16g02771 214 SUPERFAMILY CheY-like 25 151 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02771 Trre-Chr16 23358165 23359603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02771 5 181 Response Regulator Gene Family AT3G48100 65.363 1.68e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g02771 Response_reg 1.5e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02771 K14492 - gmx:100796843 291.197