Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02762 ATGTCTTCTCCCTCTTCCGCTGCCGTCTCCGGCGAATTCATGCTCTTCGGAGTTAGAGTCGTCGTTGATTCCATGAGGAAGAGTGTCAGTATGAACAATCTCTCACAGTACGAACAACCTCAAGACAACAACAACAACAACAACAATATCAGCATCAAGGATGATAACAACAAAGACGTTCTCGCCGCCGGTTATGCTTCCGCCGATGACGCCGTTCTGAATAACTCCGGCAGAAACCGCGATCGCGAGCGTAAACGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTTTTGGTTGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCAAGAAACTATGTGAAAACTCGAACGCCGACGCAGGTTGCAAGCCATGCTCAGAAGTACTTTCTCCGCCGAAGTAATCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGATATCACCACCGACACGGTGTCTGCAATTCCAATGGAGGAAGAACAGGTCAAAAATCAAGACAGTGTTTCTCAATCACAGCCTATGTGCCCTGCAGCAGCTCCTGAACCTAGAAAAAACAATGGATTTCCTTTTATGTCAATATTTGAGTTGGGTGTTAATGAGAGTCCAATGGAAGAACTCACTCTTGGACAAGGAAATGTGAAACAAAATTTCCCAATCAACAATCTATTCAATCCAATTCCTTTTGTTGTTTCAGATCCTAAAACTTCCACTGTCTCTGATAACACCTCTAGTTCTAGTTCATCAATTGACCCTCCAACACTTTCCCTTGGGTTGTCCTTCTCATCTGATCAAAGGAAGACATCATCAACACACTCAGCTTTACATGCAATGCCATGTTTCAACAATGGAGACAACATCATAAGTGTTGCTTAA 888 0.4471 MSSPSSAAVSGEFMLFGVRVVVDSMRKSVSMNNLSQYEQPQDNNNNNNNISIKDDNNKDVLAAGYASADDAVLNNSGRNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVKNQDSVSQSQPMCPAAAPEPRKNNGFPFMSIFELGVNESPMEELTLGQGNVKQNFPINNLFNPIPFVVSDPKTSTVSDNTSSSSSSIDPPTLSLGLSFSSDQRKTSSTHSALHAMPCFNNGDNIISVA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02762 295 Pfam Myb-like DNA-binding domain 89 134 IPR001005 -
Trre16g02762 295 SMART sant 86 136 IPR001005 -
Trre16g02762 295 CDD SANT 89 134 IPR001005 -
Trre16g02762 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 85 136 IPR006447 GO:0003677
Trre16g02762 295 ProSiteProfiles Myb-like domain profile. 82 134 IPR001005 -
Trre16g02762 295 MobiDBLite consensus disorder prediction 165 179 - -
Trre16g02762 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 138 IPR017930 -
Trre16g02762 295 SUPERFAMILY Homeodomain-like 84 139 IPR009057 -
Trre16g02762 295 PANTHER TRANSCRIPTION FACTOR KUA1 12 246 - -
Trre16g02762 295 MobiDBLite consensus disorder prediction 165 187 - -
Trre16g02762 295 MobiDBLite consensus disorder prediction 35 54 - -
Trre16g02762 295 ProSiteProfiles SANT domain profile. 90 138 IPR017884 -
Trre16g02762 295 MobiDBLite consensus disorder prediction 239 267 - -
Trre16g02762 295 FunFam transcription factor MYB1R1 88 139 - -
Trre16g02762 295 Gene3D - 88 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02762 Trre-Chr16 23227160 23228797 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g02762 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02762 - - psat:127073868 459.914