Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02760 ATGGCTTCTTCCAATCTCACCAACCTCACTATTCCTTCTTCAACTTCCCGTCCCCCCAATGATCCCAATCCATCACCATCAACAACCAGCCCACAAATCATCTACAGTAGGTCCCACTCCTTCGTCGGCCCCTCCCCTCGTTTCCCTCCTCCTTCCGATAACAACTCTCTCTTCTTCCTCGACGAACTCGCCTCCAACAGCGACGAAGAAGAAGAACAAGAAGAAGAATACCAAATCGAACAACAACAAGAACGCAAATTCGGACCCTCTGATTTCCAAATTCTCAAAGTTATTGGACAAGGTGCCTTCGGAAAAGTCTTCATGGTCAGAAGAAAAGGTACTGATGAAGTTGACGGTAACGGAATATTGGCGATGAAGGTTATGAGAAAAGACAACATAATTAAGAAAAATCATGTTGATTATATGAAAGCTGAAAGAGATATTCTCACTAAAGTTCTTCATCCTTTCATTGTTCCTCTTCGCTACTCTTTCCAAACTAAATCTAAATTATATTTGATTTTGGACTTTATAAATGGTGGCCATCTCTTCTTTCAATTATGTCGACAGGGAATTTTTAGTGAGGATGAGGCAAGGATTTACACTGCTGAGATTGTATCTGCTGTTTCACATCTTCACACCAAAGGCATCGTGCATCGAGATCTTAAACCTGAAAACATACTTATGGATTCTGATGGCCATGTGATGCTAACGGATTTTGGAATGTCGAAAGTGATTGAGGAATCTGAGAGATCTAACTCGATGTGCGGGACTACAGAATATATGGCACCGGAAATCCTTCTAGGTAAAGGCCATAACAAGGACGCAGATTGGTGGAGTGTTGGTGTTCTCTTGTATGAAATGATTACGGGAAAGGCACCATTTACACATACTAACAGAAAGAAGCTACAGGAGAAAATTATCAAAGAGAAAGTTAAACTTCCTCCATATCTTACCGGTGAAGCTCATTCTTTGCTCAAAGGATTGCTGCAAAAGGATCCATCAACAAGGTTAGGCAGTGGACCAAATGGACATGAACAGATCAAAAACCATAAATGGTTTAGGACAATCAATTGGAACAAATTGGAAGCAAGAGAATTGCAGCCCAAGTTTAAACCAGCTGATGTGTCTGGAAAAGATTGCACAGCTAATTTTGATCGATGCTGGACAACGATGCCTCTTGAGGATTCACCAGCATCAACTCCTACAGGAGGTGACCATTTCCAGGGATATACTTATGTGGCACCAAATCCTTGGCTTTCTTCTAGGTAA 1269 0.4153 MASSNLTNLTIPSSTSRPPNDPNPSPSTTSPQIIYSRSHSFVGPSPRFPPPSDNNSLFFLDELASNSDEEEEQEEEYQIEQQQERKFGPSDFQILKVIGQGAFGKVFMVRRKGTDEVDGNGILAMKVMRKDNIIKKNHVDYMKAERDILTKVLHPFIVPLRYSFQTKSKLYLILDFINGGHLFFQLCRQGIFSEDEARIYTAEIVSAVSHLHTKGIVHRDLKPENILMDSDGHVMLTDFGMSKVIEESERSNSMCGTTEYMAPEILLGKGHNKDADWWSVGVLLYEMITGKAPFTHTNRKKLQEKIIKEKVKLPPYLTGEAHSLLKGLLQKDPSTRLGSGPNGHEQIKNHKWFRTINWNKLEARELQPKFKPADVSGKDCTANFDRCWTTMPLEDSPASTPTGGDHFQGYTYVAPNPWLSSR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02760 422 ProSiteProfiles AGC-kinase C-terminal domain profile. 354 422 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre16g02760 422 Coils Coil 60 83 - -
Trre16g02760 422 Gene3D Phosphorylase Kinase; domain 1 90 396 - -
Trre16g02760 422 MobiDBLite consensus disorder prediction 1 16 - -
Trre16g02760 422 FunFam Non-specific serine/threonine protein kinase 177 372 - -
Trre16g02760 422 Gene3D Transferase(Phosphotransferase) domain 1 177 372 - -
Trre16g02760 422 FunFam Non-specific serine/threonine protein kinase 90 198 - -
Trre16g02760 422 ProSiteProfiles Protein kinase domain profile. 92 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02760 422 Pfam Protein kinase domain 92 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02760 422 PANTHER RIBOSOMAL PROTEIN S6 KINASE 59 416 - -
Trre16g02760 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Trre16g02760 422 SMART serkin_6 92 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02760 422 Pfam Protein kinase C terminal domain 375 412 IPR017892 GO:0004674|GO:0005524|GO:0006468
Trre16g02760 422 MobiDBLite consensus disorder prediction 1 57 - -
Trre16g02760 422 SUPERFAMILY Protein kinase-like (PK-like) 75 382 IPR011009 -
Trre16g02760 422 SMART pkinase_C_6 354 414 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre16g02760 422 ProSitePatterns Protein kinases ATP-binding region signature. 98 126 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02760 Trre-Chr16 23201852 23204753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02760 31 415 AGC Kinase Gene Family AT3G08720 61.275 2.03e-178 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Trre16g02760 Pkinase 1.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02760 K04688 - gmx:100798259 632.484