Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02758 ATGCCAGAGGAACTTCAGATGATGAGGAATCTAAAAGAGCTTGATATTAGTAGTTGTAATCTCACTGGATCTATCCCTATTTCAATAGGAATGTTGTCCAATATATCAAGGCTTAGGTTAGAGAACAATCAACTTTTTGGCCACATTCCTCGTGAAATTGGAAAGTTGAACTTCGTGAAATTGATTTGGCTGTTAACCATCTCTTTGGCACAATCCCTTCCACCTTCCATAGGATACTTGATTAATTTGGATACTAATGTTCTTTATCAAAATGAACTCTCGGGACTAATTCCTTCCACTATAGGGAATTTAACAAATCTTCGTATCGTAACTCTTTTCTCAAATGCACTTAGTGGCAATATTCGTACAGAAATAAATAGCCTTAGAAATTTGAAAAAATTACAGTTAGGTGATAATAATTTCATTGAAGAAGTTCCTGTTCAGATTGCATTATTGCCTGAACTAACTATTTTGGAGCTTTCAACTAATAATTTAAGCGGCTTCATCCCAGAACAATTTGGAATGTTACCTAAGTTATTATGGAACTATACCAGCAATGCTTGGACAGTTGAAATTCTTAGAAACATAATTGTTGATATATCATACAACCAATTGGAGGGTCCAATTCCAAGCATTCCAGCCTTTCAAAAAGCCTCATTTCAATCACTGAGAAATAACAAAGACTTGTGTGGTGATATATCTGGCCTAGAGCCTTGCTCGACATCACGTGGAAACATTCATAGTCATAATGATAAGACTAACAAAATTTTGGTGGCAATTTTGCCCCTCACATTGGGTGCCTTATTGTTAGCATTATTTGTTTATGGGTTGTCTTATCATCTTTGTCAAACTTCAAGCACCAAAGAATACAAGACCGCGAAAGAATCAAATGCTACAAATATATTTTCTATATGCGATGAACTGTCAACTGAATTTGATTGGAACATGAGAGTGAATGTCATTAAAGATATAGCTAATGCTTTATGTTATATGCATTATGATTGCTCACCTGTAATTGTTCATCGCGATATATCTAGCAAGAATGTTGTTTTGGATTTGGAATATGTAGCTCATGTCTCAGACTTCGGTACAGCTAAGTTTCTAAATCCCGACTCATCCAACTTGACCAATTTTGTAGGAACATTGCTCCAGAACTTGCATACACAACGGAAGTATATAAGAAATGCGATGTGTATAGTTTTGGAGTATTAA 1212 0.3523 MPEELQMMRNLKELDISSCNLTGSIPISIGMLSNISRLRLENNQLFGHIPREIGKLNFVKLIWLLTISLAQSLPPSIGYLINLDTNVLYQNELSGLIPSTIGNLTNLRIVTLFSNALSGNIRTEINSLRNLKKLQLGDNNFIEEVPVQIALLPELTILELSTNNLSGFIPEQFGMLPKLLWNYTSNAWTVEILRNIIVDISYNQLEGPIPSIPAFQKASFQSLRNNKDLCGDISGLEPCSTSRGNIHSHNDKTNKILVAILPLTLGALLLALFVYGLSYHLCQTSSTKEYKTAKESNATNIFSICDELSTEFDWNMRVNVIKDIANALCYMHYDCSPVIVHRDISSKNVVLDLEYVAHVSDFGTAKFLNPDSSNLTNFVGTLLQNLHTQRKYIRNAMCIVLEY 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02758 403 Pfam Protein kinase domain 312 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02758 403 PANTHER LEUCINE RICH REPEAT KINASE 2 2 304 - -
Trre16g02758 403 ProSiteProfiles Protein kinase domain profile. 107 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02758 403 Pfam Leucine rich repeat 129 179 IPR001611 GO:0005515
Trre16g02758 403 SUPERFAMILY L domain-like 2 231 - -
Trre16g02758 403 Gene3D Transferase(Phosphotransferase) domain 1 299 390 - -
Trre16g02758 403 Gene3D Ribonuclease Inhibitor 1 247 IPR032675 -
Trre16g02758 403 Pfam Leucine Rich Repeat 10 29 IPR001611 GO:0005515
Trre16g02758 403 SUPERFAMILY Protein kinase-like (PK-like) 304 382 IPR011009 -
Trre16g02758 403 ProSitePatterns Tyrosine protein kinases specific active-site signature. 339 351 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02758 Trre-Chr16 23170154 23171737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02758 306 381 Receptor kinase-like Gene Family AT4G08850 56.579 7.95e-23 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre16g02758 Pkinase 2.3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02758 - - qsu:112011352 244.588