Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02746 ATGGCTGGTTTATTCTCATTAGGAGGTGGTGGAGGTGGAGGAGGAAGAGGAGGAGGAGGAGAATCAAACCAACAAGGTCAAATTCCTCCACAAGAGAATCTACTTTGGTACAACAAAAACGACGACGTTTCATCCTACGGAGGAAATTTAGAATTATGGAACCAACAACAACAGCAGCAACATCATCAGCATCAGCAGCAACAACAACAGCAACAAGATGATATGCATGGTGTTGTTGCAAGGCCATTTTTTTCGCGAGATCTCTATGGATTAGGTGTGGGACCCAGTAGGGTTTCATCAGATGATCAGTCGTCACCGAGATCGGCTGCTGCTGCTTTTAATATGACGGTAAGGTCATCATCTGGTGTTGGTGTTGAAGGAATTAGCTGTCAAGATTGTGGTAACCAAGCTAAAAAAGATTGTAGTCACATGAGATGTAGAACTTGTTGTAAGAGTCGTGGATTTCATTGTCAAACTCATGTTAAAAGTACTTGGGTACCTGCTTCAAGACGCCGTGAACGTCAACAACAATTATCTTCACCATCTTCATTACAACAACAACAACAACATCATCACAGAGATATTTCAAAACGACCTAGAGATGCTCTTGTCCCCACACGCAATTTCCCTTCAGGGTTAGAGGAAGCAAATTTTCCAGCTGTGGTTAGCTCTCCAGCAGAGTTTAGGTGTGTAAGGGTTAGTTCAATTGATGATGCAGAAGATAAGTATGCATATCAAACGGCTGTAAACATTGGAGGACATTTGTTCAAAGGAATTCTCTATGACTTTGGTCCAGAAACTAATAGCAACAATAACAACAATACTAATTATAATAGTAGTAATTACATGATTGGGGAAACTTCCGGTGGCAGCGGTGGTGTTGGTGTCGCTCAGCCGCTGAACCTAATCGCCGACTCTGATGTCACTGTTGCTGCCTCTTCGGGGGCACTTGTTGATCCTTCTTCCTTGTATTCAGCTGCTGCCCCGATTAACGCCTTCATGGCGGCTAGTGGTACGCAATTCTTCCCTCGCCCAAGATCTTGA 1044 0.4368 MAGLFSLGGGGGGGGRGGGGESNQQGQIPPQENLLWYNKNDDVSSYGGNLELWNQQQQQQHHQHQQQQQQQQDDMHGVVARPFFSRDLYGLGVGPSRVSSDDQSSPRSAAAAFNMTVRSSSGVGVEGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCQTHVKSTWVPASRRRERQQQLSSPSSLQQQQQHHHRDISKRPRDALVPTRNFPSGLEEANFPAVVSSPAEFRCVRVSSIDDAEDKYAYQTAVNIGGHLFKGILYDFGPETNSNNNNNTNYNSSNYMIGETSGGSGGVGVAQPLNLIADSDVTVAASSGALVDPSSLYSAAAPINAFMAASGTQFFPRPRS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02746 347 MobiDBLite consensus disorder prediction 1 42 - -
Trre16g02746 347 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 330 IPR007818 GO:0003700|GO:0006355
Trre16g02746 347 MobiDBLite consensus disorder prediction 20 42 - -
Trre16g02746 347 MobiDBLite consensus disorder prediction 167 189 - -
Trre16g02746 347 MobiDBLite consensus disorder prediction 55 75 - -
Trre16g02746 347 Pfam Domain of unknown function (DUF702) 127 266 - -
Trre16g02746 347 NCBIfam putative zinc finger domain, LRP1 type 129 171 IPR006510 -
Trre16g02746 347 MobiDBLite consensus disorder prediction 167 204 - -
Trre16g02746 347 NCBIfam LRP1 C-terminal domain 218 265 IPR006511 -
Trre16g02746 347 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02746 Trre-Chr16 22985840 22987661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02746 1 347 C2H2 Transcription Factor Family AT3G51060 45.592 3.15e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre16g02746 DUF702 3e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02746 - - gmx:100781981 327.02