Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02721 ATGATGGAGTCATGTGTCCCACCTGGATTTCGGTTTCATCCAACAGATGGAGAACTTGTTGGTTATTATCTTAGAAAGAAAGTAGCTTCTCACAAGATTGATCTTGATGTTATCAAAGAGATCGATTTATATCGTATCGAACCATGGGATCTTCAAGGGAGATGCAGAATTGGAAATGAGGAACAACATGAGTTTTATTTTTTTAGTCACAAAGACAAAAAATATCCAACGGGGACAAGAACAAACAGAGCTACAATGGCAGGGTTCTGGAAAGCAACCGGAAGAGATAAGTCGGTGTACGAACGAACAAAACTGATTGGGATGAGGAAGACGCTCGTTTTCTACAAAGGAAGAGCTCCTAATGGACACAAAACTGATTGGATCATGCATGAGTATAGGCTTGAAACAATTGAAAATGCACCTCCACAGGAGGAAGGTTGGGTTGTATGCAAAGCATTCAAGAAAAAAACCAATTTCCAAACAAAGGCTAATGCAAGATGGGATCAAAGTTACTTATATGATGAACAAACAAGTGGCATCATCTCAAAGGTAGACACTTTTCATGACCTCACCTTAAGTCAACCTCAGAGGATTCCACCTCAAAATTTCATGTACAAACAAGAGATAGAAGCAGATAGCATATTAAGCTTCATGCATTCAGAACATTTGTTACCTCTCCCTCAGCTACAAAGTCCCTCTATGGCAAAGAGACAAAACACAATGTCAATAATATCTGAAAATAACATTAACAATAATGATTTTCAAAATGGATTATTGTCCAACATAAACAAAACAAACAAAGTGACTGATTGGAGGACTTTTGACAAGTTTGTGGCTTCTCAATTGAGTCAAGAAGATCATAGGCATGACACAAGCTCAGATATGTCATTGTTGCTACTTCAAAGTAGTAGAGATGAAGAGAACAAGTTAAGCTCATTTTTAAGTACAAGCTTAGACTGTGATGTTGGGATATGTTTATTTGAACATTAA 990 0.3727 MMESCVPPGFRFHPTDGELVGYYLRKKVASHKIDLDVIKEIDLYRIEPWDLQGRCRIGNEEQHEFYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGHKTDWIMHEYRLETIENAPPQEEGWVVCKAFKKKTNFQTKANARWDQSYLYDEQTSGIISKVDTFHDLTLSQPQRIPPQNFMYKQEIEADSILSFMHSEHLLPLPQLQSPSMAKRQNTMSIISENNINNNDFQNGLLSNINKTNKVTDWRTFDKFVASQLSQEDHRHDTSSDMSLLLLQSSRDEENKLSSFLSTSLDCDVGICLFEH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02721 329 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Trre16g02721 329 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Trre16g02721 329 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Trre16g02721 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 251 - -
Trre16g02721 329 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Trre16g02721 329 FunFam NAC domain-containing protein 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02721 Trre-Chr16 22670855 22674530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02721 2 329 NAC Transcription Factor Family AT2G18060 56.986 6.23e-133 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g02721 NAM 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02721 - - aprc:113869508 455.292