Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02720 ATGAGAACTCGAAATTCTGATTCATCTTCCAAATCCACAATCCCTAAAAATACACCGTCGGCGATAAAACCCGCCGGAGTATTTCCCGCCGCAAACCGCAAATTTCCGTCCAAAGTCAGAAACGCTAAGAATTTGGAAACATCGCCCGTAACCGATCCGGATCAATCTCAGAAGCAGAACTCATTAGCGAGTACTACCACTATGAAATCTGTAAAGAGGAAAACACCAACGAAACCGAGAACAAAAGTGGTTGCCGACACTCCAAATGTGGAAGAGCAATTGGGGGCTGAAGTTAATGAAACTACAGTTGTAGAGAATTATGAGGCAGCAGAGAGAGTGGAAGAAGCTGGAAGTGTTACGGACATTGATGTGGATAATATCGAGAGTGAGAAAAAAGGGGAACAAAGTTTTGGATCTATTGGGTTAACTGATGAGAGGGAACAAAAGCCTATGGAAGTGGATGAACCTGTTATTGAAAAAGAGTGTGAATTGGTCGAAAAGGGAAAGAGCATGGAAGATGTTGAACCAATTGTTTCTCAGGATGCTTCTCTATCTTTTAAACAACCGGGTTGCACCATTGTGGACCTCAATATATCTGTGGACGATAGTGAAGTTTATACTGGTGCAAAGGAGGGAGGGGAAGAGTTGAAAGAGGAAGAGTTGAAAGTAAATGACGGAGAAAAAGGAAAGGATGAGTTGAAAGAGCAAGAAGGAGAGAAAGGAAAAGAAGAGTTTAACCAACAAAAAAGAGAAAAAGAAATGGAAGAGTTTAAAATACAAGAAGGAGAAAAAGGAACGGAAGAGTTGAAAGAACAGGGAGGAGATAAAGAAATGGAAGAGTATAAAATACAGGAAATAGAAAAAGCAAAAGGAGAGGAAACAAACAATATTGGACATGAAGAGCACTCTAGCGTAGAAGTACAAGTCAAGCTGCAAAAAGATGTTGATCCCAAAAATTACGGTGTTGAAGGGCCAAAGAGTGATGAATCGATAGATCTCGGAGAACAAGGGAGGGTGGAGCTTGAGGAGGAAGATGTAGAGGAAGATCCAGAAGAAGATCCGGAGGAACCGCCCAAAGAAACTGAGACATTGGATGAAGAGCATATGGAATTTGAAGCCATTGCAAAGGAGCGAAAGATTAGGAAAGAGCATGAGATATTTGTTGGTGGATTGGATTGTGAGGCTACAGAGGAAGATCTGAGGAAGGTTTTTCAGAGGATTGGGGAGGTAGTGGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAATAAGGTCTATGCTTTTGTGAAGTTTTCTAGAAAGGAGCATGCAAAGAAAGCTTTATCTGAAATGAAAAACCCTGTTATACATGGAAAACGATGTGGCACCGCACCTTGTGAGGATAATGACACATTATTCTTAGGAAATATTTGCAATACATGGACAAAAGAAGCTATTATACAGAAGCTGAAGGATTATGGTGTTGAAGGGGTTGAAAGCATTACGCTTGAACCAGATGTTCAACATGAAGGCTTGAGCCAGGGTTTTGCATTCCTTGAGTTTTCTTGTCATGCTGATGCCATGCTGGCATACAAGAGACTTCAAAAGCCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCTAAGGTAGCCTTTGCCGAACCGATACATGAACCAGACTCAGAGATAATGGCACAAGTAAAATCTGTGTTTATTGACGGTCTCCCTCTTGACTGGGACGAAGATCATGTGAGGGAGCTATTGAAATCGTATGGTGAAATTGTAAGAATTGTTTTGTCAAGGAATATGTCCACAGCTAAGAGTAAGGATTATGGATTTGTCGATTTTTCCACACATGAAGCTGCTTTAGCTTGTGTTGACAGTGTAAATAAATCAGAATTGGGAGATGGGAAATCAGAGATAAAAGTGAGGGCTAGGCTTTCAAAACCTTTGCCTAAAATGCAGGCTGTTAAAGGTGGCATGTGCGGTGACCTCCGCATTGGTCAGGCTAGGAGTGAAGCCTACCCTAGATCCGATAGGGGTTTTGGGCGGGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAATAGGGGCAGGGGTTTATATCATCATGGGGGGCGCAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCCTGAATTTAGTATGCATCCGGATTTTCATCAGTGGCAATTTGGTCCACAAGCAGCTATGAGGGGTGGATATCATGCAGGTAGTCGAGGAGGTGCTCCATTTACTGGTCCATCGAGACATTATCATGATAGAGCATGGTATGGTATCCCTGATGGAGGCCCCGGTGAGCCTCTTCCTCCAAGAAGGCCCTACTCCTCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATGTTGATGATCCATATCTATATGATGATGATATGCGTGGAATCAAACGTCCACTTTATATGACTGATCCTGAACCTGATTTCATGGGGCCCAATAGATTTCGCCCCAGATTTGATTATGCAGATCCATCTATGTTTCACGGAACTCGTTACCATGATTATGCTGGGGCTGGCAGCAGACCGTACCCACAGGACTATCATGGTTCTGATCATGGTGGAGGTCCATATTCATCTTTTTATGGGGGAGATGGCCCACATGGACACAGACACTACTATTAG 2652 0.4306 MRTRNSDSSSKSTIPKNTPSAIKPAGVFPAANRKFPSKVRNAKNLETSPVTDPDQSQKQNSLASTTTMKSVKRKTPTKPRTKVVADTPNVEEQLGAEVNETTVVENYEAAERVEEAGSVTDIDVDNIESEKKGEQSFGSIGLTDEREQKPMEVDEPVIEKECELVEKGKSMEDVEPIVSQDASLSFKQPGCTIVDLNISVDDSEVYTGAKEGGEELKEEELKVNDGEKGKDELKEQEGEKGKEEFNQQKREKEMEEFKIQEGEKGTEELKEQGGDKEMEEYKIQEIEKAKGEETNNIGHEEHSSVEVQVKLQKDVDPKNYGVEGPKSDESIDLGEQGRVELEEEDVEEDPEEDPEEPPKETETLDEEHMEFEAIAKERKIRKEHEIFVGGLDCEATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKVYAFVKFSRKEHAKKALSEMKNPVIHGKRCGTAPCEDNDTLFLGNICNTWTKEAIIQKLKDYGVEGVESITLEPDVQHEGLSQGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIHEPDSEIMAQVKSVFIDGLPLDWDEDHVRELLKSYGEIVRIVLSRNMSTAKSKDYGFVDFSTHEAALACVDSVNKSELGDGKSEIKVRARLSKPLPKMQAVKGGMCGDLRIGQARSEAYPRSDRGFGRGRGRQPFNNRGNFNRGRGLYHHGGRSQIGRMGFRDDPEFSMHPDFHQWQFGPQAAMRGGYHAGSRGGAPFTGPSRHYHDRAWYGIPDGGPGEPLPPRRPYSSGGQFDMPFMGRHVDDPYLYDDDMRGIKRPLYMTDPEPDFMGPNRFRPRFDYADPSMFHGTRYHDYAGAGSRPYPQDYHGSDHGGGPYSSFYGGDGPHGHRHYY 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02720 883 MobiDBLite consensus disorder prediction 41 72 - -
Trre16g02720 883 SUPERFAMILY RNA-binding domain, RBD 385 529 IPR035979 GO:0003676
Trre16g02720 883 SMART rrm1_1 465 542 IPR000504 GO:0003723
Trre16g02720 883 SMART rrm1_1 385 458 IPR000504 GO:0003723
Trre16g02720 883 SMART rrm1_1 563 638 IPR000504 GO:0003723
Trre16g02720 883 MobiDBLite consensus disorder prediction 852 872 - -
Trre16g02720 883 Gene3D - 329 458 IPR012677 -
Trre16g02720 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 549 IPR000504 GO:0003723
Trre16g02720 883 SUPERFAMILY RNA-binding domain, RBD 554 639 IPR035979 GO:0003676
Trre16g02720 883 Gene3D - 463 548 IPR012677 -
Trre16g02720 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 384 454 IPR000504 GO:0003723
Trre16g02720 883 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 52 883 - -
Trre16g02720 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 386 454 IPR000504 GO:0003723
Trre16g02720 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 564 630 IPR000504 GO:0003723
Trre16g02720 883 MobiDBLite consensus disorder prediction 208 337 - -
Trre16g02720 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 562 644 IPR000504 GO:0003723
Trre16g02720 883 MobiDBLite consensus disorder prediction 338 360 - -
Trre16g02720 883 CDD RRM_SF 386 455 - -
Trre16g02720 883 Coils Coil 216 236 - -
Trre16g02720 883 MobiDBLite consensus disorder prediction 128 155 - -
Trre16g02720 883 MobiDBLite consensus disorder prediction 208 365 - -
Trre16g02720 883 MobiDBLite consensus disorder prediction 668 704 - -
Trre16g02720 883 FunFam Heterogeneous nuclear ribonucleoprotein Q 464 548 - -
Trre16g02720 883 Gene3D - 551 704 IPR012677 -
Trre16g02720 883 MobiDBLite consensus disorder prediction 1 89 - -
Trre16g02720 883 CDD RRM_SF 564 638 - -
Trre16g02720 883 FunFam Heterogeneous nuclear ribonucleoprotein Q 549 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02720 Trre-Chr16 22658778 22663269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02720 386 630 Eukaryotic Initiation Factors Gene Family AT1G22760 24.806 1.66e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02720 - - tpra:123920681 1179.08