Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02719 ATGAGAACTCGAAATTCTGATTCATCTTCCAAATCCACAATCCCTAAAAATACACCGTCGGCGATAAAACCCGCCGGAGTATTTCCCGCCGCAAACCGCAAATTTCCGTCCAAAGTCAGAAACGCTAAGAATTTGGAAACATCGCCCGTAACCGATCCGGATCAATCTCCAGAGAAGCAGAACTCATTAGCGAGTACTACCACTATGAAATCTGTAAAGAGGAAAACACCAACGAAACCGAGAACAAAAGTGGTTGCCGACACTCCAAATGTGGAAGAGCAATTGGGGGCTGAAGTTAATGAAACTACAGTTGTAGAGAATTATGAGGCAGCAGAGAGAGTGGAAGAAGCTGGAAGTGTTACGGACATTGATGTGGATAATATCGAGAGTGAGAAAAAAGGGGAACAAAGTTTTGGATCTATTGGGTTAACTGATGAGAGGGAACAAAAGCCTATGGAAGTGGATGAACCTGTTATTGAAAAAGAGTGTGAATTGGTCGAAAAGGGAAAGAGCATGGAAGATGTTGAACCAATTGTTTCTCAGGATGCTTCTCTATCTTTTAAACAACCGGGTTGCACCATTGTGGACCTCAATATATCTGTGGACGATAGTGAAGTTTATACTGGTGCAAAGGAGGGAGGGGAAGAGTTGAAAGAGGAAGAGTTGAAAGTAAATGACGGAGAAAAAGGAAAGGATGAGTTGAAAGAGCAAGAAGGAGAGAAAGGAAAAGAAGAGTTTAACCAACAAAAAAGAGAAAAAGAAATGGAAGAGTTTAAAATACAAGAAGGAGAAAAAGGAACGGAAGAGTTGAAAGAACAGGGAGGAGATAAAGAAATGGAAGAGTATAAAATACAGGAAATAGAAAAAGCAAAAGGAGAGGAAACAAACAATATTGGACATGAAGAGCACTCTAGCGTAGAAGTACAAGTCAAGCTGCAAAAAGATGTTGATCCCAAAAATTACGGTGTTGAAGGGCCAAAGAGTGATGAATCGATAGATCTCGGAGAACAAGGGAGGGTGGAGCTTGAGGAGGAAGATGTAGAGGAAGATCCAGAAGAAGATCCGGAGGAACCGCCCAAAGAAACTGAGACATTGGATGAAGAGCATATGGAATTTGAAGCCATTGCAAAGGAGCGAAAGATTAGGAAAGAGCATGAGATATTTGTTGGTGGATTGGATTGTGAGGCTACAGAGGAAGATCTGAGGAAGGTTTTTCAGAGGATTGGGGAGGTAGTGGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAATAAGGTCTATGCTTTTGTGAAGTTTTCTAGAAAGGAGCATGCAAAGAAAGCTTTATCTGAAATGAAAAACCCTGTTATACATGGAAAACGATGTGGCACCGCACCTTGTGAGGATAATGACACATTATTCTTAGGAAATATTTGCAATACATGGACAAAAGAAGCTATTATACAGAAGCTGAAGGATTATGGTGTTGAAGGGGTTGAAAGCATTACGCTTGAACCAGATGTTCAACATGAAGGCTTGAGCCAGGGTTTTGCATTCCTTGAGTTTTCTTGTCATGCTGATGCCATGCTGGCATACAAGAGACTTCAAAAGCCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCTAAGGTAGCCTTTGCCGAACCGATACATGAACCAGACTCAGAGATAATGGCACAAGTAAAATCTGTGTTTATTGACGGTCTCCCTCTTGACTGGGACGAAGATCATGTGAGGGAGCTATTGAAATCGTATGGTGAAATTGTAAGAATTGTTTTGTCAAGGAATATGTCCACAGCTAAGAGTAAGGATTATGGATTTGTCGATTTTTCCACACATGAAGCTGCTTTAGCTTGTGTTGACAGTGTAAATAAATCAGAATTGGGAGATGGGAAATCAGAGATAAAAGTGAGGGCTAGGCTTTCAAAACCTTTGCCTAAAATGCAGGCTGTTAAAGGTGGCATGTGCGGTGACCTCCGCATTGGTCAGGCTAGGAGTGAAGCCTACCCTAGATCCGATAGGGGTTTTGGGCGGGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAATAGGGGCAGGGGTTTATATCATCATGGGGGGCGCAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCCTGAATTTAGTATGCATCCGGATTTTCATCAGTGGCAATTTGGTCCACAAGCAGCTATGAGGGGTGGATATCATGCAGGTAGTCGAGGAGGTGCTCCATTTACTGGTCCATCGAGACATTATCATGATAGAGCATGGTATGGTATCCCTGATGGAGGCCCCGGTGAGCCTCTTCCTCCAAGAAGGCCCTACTCCTCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATGTTGATGATCCATATCTATATGATGATGATATGCGTGGAATCAAACGTCCACTTTATATGACTGATCCTGAACCTGATTTCATGGGGCCCAATAGATTTCGCCCCAGATTTGATTATGCAGATCCATCTATGTTTCACGGAACTCGTTACCATGATTATGCTGGGGCTGGCAGCAGACCGTACCCACAGGACTATCATGGTTCTGATCATGGTGGAGGTCCATATTCATCTTTTTATGGGGGAGATGGCCCACATGGACACAGACACTACTATTAG 2655 0.4309 MRTRNSDSSSKSTIPKNTPSAIKPAGVFPAANRKFPSKVRNAKNLETSPVTDPDQSPEKQNSLASTTTMKSVKRKTPTKPRTKVVADTPNVEEQLGAEVNETTVVENYEAAERVEEAGSVTDIDVDNIESEKKGEQSFGSIGLTDEREQKPMEVDEPVIEKECELVEKGKSMEDVEPIVSQDASLSFKQPGCTIVDLNISVDDSEVYTGAKEGGEELKEEELKVNDGEKGKDELKEQEGEKGKEEFNQQKREKEMEEFKIQEGEKGTEELKEQGGDKEMEEYKIQEIEKAKGEETNNIGHEEHSSVEVQVKLQKDVDPKNYGVEGPKSDESIDLGEQGRVELEEEDVEEDPEEDPEEPPKETETLDEEHMEFEAIAKERKIRKEHEIFVGGLDCEATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKVYAFVKFSRKEHAKKALSEMKNPVIHGKRCGTAPCEDNDTLFLGNICNTWTKEAIIQKLKDYGVEGVESITLEPDVQHEGLSQGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIHEPDSEIMAQVKSVFIDGLPLDWDEDHVRELLKSYGEIVRIVLSRNMSTAKSKDYGFVDFSTHEAALACVDSVNKSELGDGKSEIKVRARLSKPLPKMQAVKGGMCGDLRIGQARSEAYPRSDRGFGRGRGRQPFNNRGNFNRGRGLYHHGGRSQIGRMGFRDDPEFSMHPDFHQWQFGPQAAMRGGYHAGSRGGAPFTGPSRHYHDRAWYGIPDGGPGEPLPPRRPYSSGGQFDMPFMGRHVDDPYLYDDDMRGIKRPLYMTDPEPDFMGPNRFRPRFDYADPSMFHGTRYHDYAGAGSRPYPQDYHGSDHGGGPYSSFYGGDGPHGHRHYY 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02719 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 385 455 IPR000504 GO:0003723
Trre16g02719 884 SUPERFAMILY RNA-binding domain, RBD 386 530 IPR035979 GO:0003676
Trre16g02719 884 MobiDBLite consensus disorder prediction 669 705 - -
Trre16g02719 884 FunFam Heterogeneous nuclear ribonucleoprotein Q 550 703 - -
Trre16g02719 884 CDD RRM_SF 565 639 - -
Trre16g02719 884 MobiDBLite consensus disorder prediction 209 338 - -
Trre16g02719 884 FunFam Heterogeneous nuclear ribonucleoprotein Q 465 549 - -
Trre16g02719 884 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 56 884 - -
Trre16g02719 884 SUPERFAMILY RNA-binding domain, RBD 555 640 IPR035979 GO:0003676
Trre16g02719 884 CDD RRM_SF 387 456 - -
Trre16g02719 884 MobiDBLite consensus disorder prediction 108 133 - -
Trre16g02719 884 Gene3D - 330 459 IPR012677 -
Trre16g02719 884 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 565 631 IPR000504 GO:0003723
Trre16g02719 884 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 387 455 IPR000504 GO:0003723
Trre16g02719 884 MobiDBLite consensus disorder prediction 209 366 - -
Trre16g02719 884 MobiDBLite consensus disorder prediction 41 73 - -
Trre16g02719 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 563 645 IPR000504 GO:0003723
Trre16g02719 884 Gene3D - 464 549 IPR012677 -
Trre16g02719 884 MobiDBLite consensus disorder prediction 339 361 - -
Trre16g02719 884 SMART rrm1_1 466 543 IPR000504 GO:0003723
Trre16g02719 884 SMART rrm1_1 564 639 IPR000504 GO:0003723
Trre16g02719 884 SMART rrm1_1 386 459 IPR000504 GO:0003723
Trre16g02719 884 Gene3D - 552 705 IPR012677 -
Trre16g02719 884 MobiDBLite consensus disorder prediction 1 156 - -
Trre16g02719 884 MobiDBLite consensus disorder prediction 853 873 - -
Trre16g02719 884 Coils Coil 217 237 - -
Trre16g02719 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 550 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02719 Trre-Chr16 22658778 22663269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02719 387 631 Eukaryotic Initiation Factors Gene Family AT1G22760 24.806 1.68e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02719 - - tpra:123920681 1183.32