Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02718 ATGAAGCGTGCGAGGAAATATAATAGGGTTTCTTGGGCTCCAGGTTCCAATCTTTGTCAGGTAAAATTGTTCTTGTCTGATGATTACCCGTCAAAAGTTGGCCTGAAATCACAAGATAATCTTGAAGGAAAGGCATCGTCAATGTTGTGTTCTAGCTCCAATGAATATGTTGATTTACCTCCTGGGTTTGAAAGCAGTCATTTCCCGAACCAATCAAAGGCTGAATTCTCCCACATTCCAAAGATAAAATGGGAATGCCCTCTCCCGTTTGTTTTCAGTTCTGCTTGTCTAGTTGCAGCTGGTGAAGAAAGCAGGGAGAAAGAGATTCAGAAGCTGAGAGAAATTAGAGTGCTTGAAGCAGTTTATCCCCGACACTCTGCCATTCCTCCTTGCCCTTCCGTTTCTTTAGATGTAAAAGAGGAAGATTATGATGATAACCTTACTCCTCTCATCCCTCTCATTCCCATCGAGGAGGAAGAGTCCATGGAGGCAGCAGTGAGCCCTCAACCCAATGGGCAGTCACAGAACTTGCATAAATATATGTCAGCACCAACTTCCTCTCGTACCATCTCCTCGGATGCTTGTGTAATGCCCTTAGCTGGGGTATCTTCTGGTTCAGTAGCTGACATAGCAGCAGCCTCGGATGTTGTGGCAGCCATCCTGAAGAGTAACGAGCAAGGAGGCTTAATTGATATGGACCTACTGGTTAAAATATTGAATGACCCGAAAATGATTGAGAATTTAATCAGTGAACATGGATCGAAAACTGTTACCTCAAATTCCGTGGTTACATCCACATCTGGATTGAAAGCTGCTACCCCATCAGTTCCAATGTTTACACCTACACCTGATGTGGCAGCTTCTAGGAACACACACCCTAGTTCTGTGGGTTTTTCTGGTTTGAAGCCTTCAACTCCATCAGTTTCATCTTTGAATCATGCATCTGGTAAGCCAGCAACTCTGTTTGCTCCTGCAATTCCATCATATTCAATTGTGACTTCTGCATATGATAAGACAGCAACTGCATCAGTTCCATTGTCTAGGCCAGTATCCGGTAAACCAGCATCCCCCTCTGTTTTTATGCCCACACTTTCACCTGCATCTCATATGCCTAGACCTGTGAACAATGATTTTCACGTGTCAAACGGAATGCCAACTGCTTTGACTTCGCAGCCTGTCAACAATGCTTTTCACATGTCAAATGGAATGCCAACTGCTCTGAATTCACAGCCTCGGCCAGATTCATTTCTGGCTTCTGGGGCGAATCGATCTGCATCTTTTACTTTTGCTTCCATATCTTCTAGTGAACAAAGCACAGTTCCATTGCCTCCTTCTACTGGGAACTTGCATGCTGTTTTGAACCATACACAAACCACTGCTAGTACAAATCCTTATCAAACCAGTACAGGTTCAGCATCTTCTGTAAAGGATGTTGACTATTATAAAAACCTCATTAGGCAACATGGTGCAGGTGGACAAGATATGCTGGACTCACAAATAGGTACTCGTCGTAGTAACTTCCAAGATAAGAAACCGGTAAATAACAATAATCAGGGGGAGGTGAAATTCAAAAGCAAGAAACAATGCATATACTTTAATAGCTCAAAGGGGTGCAGGAATGGTTTCGATTGCCCCTTTCAGCACGATGTTTCAGCTCAGTCAGGAGCTGGTAACTTCCTAGGGGGCAATAGTGCTAAAAGATTTAAACTGTGA 1713 0.4355 MKRARKYNRVSWAPGSNLCQVKLFLSDDYPSKVGLKSQDNLEGKASSMLCSSSNEYVDLPPGFESSHFPNQSKAEFSHIPKIKWECPLPFVFSSACLVAAGEESREKEIQKLREIRVLEAVYPRHSAIPPCPSVSLDVKEEDYDDNLTPLIPLIPIEEEESMEAAVSPQPNGQSQNLHKYMSAPTSSRTISSDACVMPLAGVSSGSVADIAAASDVVAAILKSNEQGGLIDMDLLVKILNDPKMIENLISEHGSKTVTSNSVVTSTSGLKAATPSVPMFTPTPDVAASRNTHPSSVGFSGLKPSTPSVSSLNHASGKPATLFAPAIPSYSIVTSAYDKTATASVPLSRPVSGKPASPSVFMPTLSPASHMPRPVNNDFHVSNGMPTALTSQPVNNAFHMSNGMPTALNSQPRPDSFLASGANRSASFTFASISSSEQSTVPLPPSTGNLHAVLNHTQTTASTNPYQTSTGSASSVKDVDYYKNLIRQHGAGGQDMLDSQIGTRRSNFQDKKPVNNNNQGEVKFKSKKQCIYFNSSKGCRNGFDCPFQHDVSAQSGAGNFLGGNSAKRFKL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02718 570 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 570 - -
Trre16g02718 570 ProSiteProfiles Zinc finger C3H1-type profile. 523 551 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02718 Trre-Chr16 22619963 22625504 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g02718 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02718 - - cam:101501407 618.616