Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02713 ATGAGGTGGTGCAGTCAGGTTATCTCATTATCGTCTGCACATGCACTCGCTCCTGTATCTTTCTTCTGCAACAAAACTGTACTACCATTTCAATTTCAAAACCCTTTCTTCTTCTTCAAATTCAAATTCAAATTCAACAACTTCTCCTTTTCTTCTACCTCTATCATCCATCGGAATCCGTTGCCAGCTCAAGTACTACCCTCATGCTCAACGGACGCTTTTGATTTTGTAGTCGTTAATTTCTACCATTTCGTGTTCATCAAAGACCCTCTACAAGAAGTCGCTAAACACCTCTCTTTCCTCGAATCCGAGGGTCTAGATATCCATGGAAGAATCTATTTGAATGAACAAGGGATTAATGCGCAGTATAGTGGGCCATCAAAAGATGCTATGGTTTATGTCAACTGGATAAAAGAGGATGACAAGTTTTCCGACATCCTGGTTCAGATATCTCAATCAGAAACTGGACACACCTTTCCATCATTGAAGTTGCGGTATAAGCCTTCATTAGTACAGTTTAAAAGTGACATATCAGATCTTCCGGTGCTTGATCCTTCAATGCGGGCAATACCTTTAGCACCTTCAGAATGGAGAGATAAATTAGAAGCCATCAATAGAAATGATCCACATTCAAAAGATTATCCTAAAAGAGATTACATTCTATTGGATGTGAGAAATGGTTATGAGTGGGACATTGGACATTTTCGTGGGGCTCAACGACCTAATGTGGACTGCTTTAGGAGCACTTCATTTGGACTGTCTCAGGAAGAGATCACTGCTTCAGACCCTTTATCAAATGTAGATAAAGAAAATACAAATATATTGATGTATTGCACAGGAGGGATTCGCTGTGATGTGTATTCTACAATACTGAGGCAGCATGGATTTCAGAATTTGTACACCCTTCAAGGAGGCGTTTCTAACTATATAAAGAACGAAGGTCCTGCAGAATGGATAGGAAATTTATTTGTTTTTGACTCCCGATTGTCTCTCCCTCCTCCTGTGTACTACCCTCAGGCCAATACTGAAGTTGGGACTCCGACTCCAACTCCAGTTTCTAAAGATGATAAGTTCGCAAAATGCTACATATGTAACTCGGGAGTCAGTGAACTGAGACATCGTAATTGTGCAAATCTTGACTGTAACTTGCTTTTTCTATGCTGCAAAACATGTGTAAAGGATCAAAGAGGATGTTGTTGTTTGACTTGCACTACTGCTCCTAGGCTTAGACCTGTTTTAAATGGAGAGCATAGATACAAGAAATGGCACATCTATCGTGACATGGATTTGCAAGCCAATACAAGAATTTCAACTTGA 1317 0.4002 MRWCSQVISLSSAHALAPVSFFCNKTVLPFQFQNPFFFFKFKFKFNNFSFSSTSIIHRNPLPAQVLPSCSTDAFDFVVVNFYHFVFIKDPLQEVAKHLSFLESEGLDIHGRIYLNEQGINAQYSGPSKDAMVYVNWIKEDDKFSDILVQISQSETGHTFPSLKLRYKPSLVQFKSDISDLPVLDPSMRAIPLAPSEWRDKLEAINRNDPHSKDYPKRDYILLDVRNGYEWDIGHFRGAQRPNVDCFRSTSFGLSQEEITASDPLSNVDKENTNILMYCTGGIRCDVYSTILRQHGFQNLYTLQGGVSNYIKNEGPAEWIGNLFVFDSRLSLPPPVYYPQANTEVGTPTPTPVSKDDKFAKCYICNSGVSELRHRNCANLDCNLLFLCCKTCVKDQRGCCCLTCTTAPRLRPVLNGEHRYKKWHIYRDMDLQANTRIST 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02713 438 CDD RHOD_YceA 192 311 - -
Trre16g02713 438 Gene3D - 68 171 - -
Trre16g02713 438 SMART rhod_4 195 315 IPR001763 -
Trre16g02713 438 Pfam UPF0176 acylphosphatase like domain 77 168 IPR040503 -
Trre16g02713 438 Gene3D - 185 340 IPR036873 -
Trre16g02713 438 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 190 332 IPR036873 -
Trre16g02713 438 ProSiteProfiles Rhodanese domain profile. 215 318 IPR001763 -
Trre16g02713 438 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 72 424 IPR020936 -
Trre16g02713 438 Pfam Rhodanase C-terminal 320 404 IPR022111 -
Trre16g02713 438 Pfam Rhodanese-like domain 217 310 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02713 Trre-Chr16 22513526 22527702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02713 75 431 Sulfurtransferasese or Rhodanese AT1G17850 65.574 2.28e-175 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02713 - - mtr:25488455 669.848