Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02709 ATGGCCATTAGAAAATCCAACAAGCTACCACAACCAGATGTTATAATCAAGCAAATTCTTAAAAGATGTTCAAGTTTTGGTAAGAAACAAGGGTACAATGAACAGGATCTTCCTGAAGATGTACCTAAAGGTCATTTTGTTGTCTATGTTGGAGAGAATAGAACAAGATATATTGTTCCAATTTCATGGTTGCCTCATCCACAGTTTCAAAGTTTGCTTCAAAGAGCTGAGGAGGAATTTGGATTCAATCATGACATGGGACTTACTATCCCTTGTGATGAAGTTGTTTTCGAGTTTCTTACTTCATTGATCAGATAA 318 0.3585 MAIRKSNKLPQPDVIIKQILKRCSSFGKKQGYNEQDLPEDVPKGHFVVYVGENRTRYIVPISWLPHPQFQSLLQRAEEEFGFNHDMGLTIPCDEVVFEFLTSLIR 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02709 105 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 36 102 IPR003676 GO:0009733
Trre16g02709 105 Pfam Auxin responsive protein 28 103 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02709 Trre-Chr16 22483305 22483622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02709 1 105 Calmodulin-binding Proteins AT3G43120 40.187 4.53e-20 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02709 K14488 - gmx:100500218 188.734