Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02693 ATGCTCTCAGTTTCTTTTATCACACCTCTCAGCACCGCCGCCAATTTCGCCGGAAAAACCATCTTATCACGGCCGTGCCACGTCAGATCCCGGCGAGTTCTCATTTCCTCCACAGCCACTGTTACTGAAGCTACCTCAACTCAGCTTCCTCACGCCATGGCTTCATGCACGTCACTTTATGAGATTCTTGGAATTGCGTCTGCTTCTTCTGATCAGGAGATTAAGGCAGCGTACCGACGACTCGCCAGAGTTTCTCATCCTGACGTGGCGGCGATTGATCGGAAGGATTCATCGGCGGATGAGTTCATGAAGATTCATGCTGCGTATTCCACGCTGTCAGATCCTGAGAAGCGTGCTAGCTATGATAGAAGTGTTAGAAGAGATTCTGAAGGTGATTCAGATTCTGAAGGTGATTCAGGCTCTGAAGGTGATTCAGGTTCTGAAGGTGATTCAGGTTCTGAAGGTGATTCAGACTCTGAAAGTGGTCCTGAAGGAGACTCTGAAAGTCAAGGCTCTGATGTTGAAGCTTCTGAAGATAAAGCCGGAAAAAGTCAGGGTTTTCACGAGGAGGAAAAAGCAAAGGTTCATTACATCGCCCATTTAAGTTGA 609 0.4778 MLSVSFITPLSTAANFAGKTILSRPCHVRSRRVLISSTATVTEATSTQLPHAMASCTSLYEILGIASASSDQEIKAAYRRLARVSHPDVAAIDRKDSSADEFMKIHAAYSTLSDPEKRASYDRSVRRDSEGDSDSEGDSGSEGDSGSEGDSGSEGDSDSESGPEGDSESQGSDVEASEDKAGKSQGFHEEEKAKVHYIAHLS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02693 202 Pfam DnaJ domain 59 122 IPR001623 -
Trre16g02693 202 SMART dnaj_3 57 117 IPR001623 -
Trre16g02693 202 ProSiteProfiles dnaJ domain profile. 58 125 IPR001623 -
Trre16g02693 202 SUPERFAMILY Chaperone J-domain 53 128 IPR036869 -
Trre16g02693 202 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 36 180 - -
Trre16g02693 202 Gene3D DnaJ domain 45 140 IPR036869 -
Trre16g02693 202 MobiDBLite consensus disorder prediction 116 134 - -
Trre16g02693 202 MobiDBLite consensus disorder prediction 135 163 - -
Trre16g02693 202 CDD DnaJ 60 114 IPR001623 -
Trre16g02693 202 MobiDBLite consensus disorder prediction 173 202 - -
Trre16g02693 202 PRINTS DnaJ domain signature 78 93 IPR001623 -
Trre16g02693 202 PRINTS DnaJ domain signature 60 78 IPR001623 -
Trre16g02693 202 PRINTS DnaJ domain signature 117 136 IPR001623 -
Trre16g02693 202 PRINTS DnaJ domain signature 97 117 IPR001623 -
Trre16g02693 202 MobiDBLite consensus disorder prediction 113 202 - -
Trre16g02693 202 ProSitePatterns Nt-dnaJ domain signature. 102 121 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02693 Trre-Chr16 22374441 22383705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02693 60 122 C2H2 Transcription Factor Family AT1G74250 44.776 2.37e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02693 - - cam:101494220 180.259