Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02691 ATGGCGGAAGAGAGATTCACCGGTGTGGTTCAATGGTTCAACAACAGCAAAGGCTTCGGATTCATCAAACCCGATGACGGTTCCGAAGATCTTTTCGTTCATCAATCTTCCATCAGATCCGATGGATTCCGCACTCTTGTTGAAGGCGATCTCGTCGAATTCGCCATCGCATCCGGTGATAACGACAAAACCAGAGCCATCGATGTCACCGGCCCTAACGGCGCTCCTCTGCAATCCAAACAGGATTCCTACGGCGGAGGCGGTCGTGGATTTGGTGGTGGATTTAGAGGTGCTGATAGGCGTAATGGTGGCGGTGGAGGCGCAGGCTGTTATAACTGCGGTGACACTGGCCACATCGCTAGGGATTGCAACCGAAGCAATAACTCCGGCGGAGGTGGAGGCGGCGCTTGTTATACTTGCGGCGCGTTTGGACATATCGCTAGGGATTGCATGCGTGGAGGCAACATCGGCGGTGGAATCGACCGTGGCAGCGGAGGTGGCACTTCATGCTACAGGTGTGGCGGAATTGGTCACATTGCAAGAGATTGCGCCACTCCAAGCAGCGGAAACAGCGGCGGCGGTTGCTACAAGTGCGGCGAGGTCGGTCACATAGCTAGGGATTGCAGCATTGAAGGTGGAAGATTTGATGGCGGTGGCAATGGAAGGTTTGATGGTGGCAACAGAAGGTTTGGTGGCGGCGGTGATGGAGGGAAGAACACATGCTTCAATTGTGGGAAGCCTGGACATTTTGCAAGGGAGTGCGTTGAGGCTTCTGGTTGA 780 0.5462 MAEERFTGVVQWFNNSKGFGFIKPDDGSEDLFVHQSSIRSDGFRTLVEGDLVEFAIASGDNDKTRAIDVTGPNGAPLQSKQDSYGGGGRGFGGGFRGADRRNGGGGGAGCYNCGDTGHIARDCNRSNNSGGGGGGACYTCGAFGHIARDCMRGGNIGGGIDRGSGGGTSCYRCGGIGHIARDCATPSSGNSGGGCYKCGEVGHIARDCSIEGGRFDGGGNGRFDGGNRRFGGGGDGGKNTCFNCGKPGHFARECVEASG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02691 259 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Trre16g02691 259 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Trre16g02691 259 Gene3D - 1 83 IPR012340 -
Trre16g02691 259 ProSiteProfiles Zinc finger CCHC-type profile. 170 183 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 SMART csp_8 7 72 IPR011129 GO:0003676
Trre16g02691 259 SMART c2hcfinal6 109 125 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 SMART c2hcfinal6 194 210 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 SMART c2hcfinal6 240 256 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Trre16g02691 259 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Trre16g02691 259 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Trre16g02691 259 ProSiteProfiles Zinc finger CCHC-type profile. 241 254 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Trre16g02691 259 ProSiteProfiles Zinc finger CCHC-type profile. 195 208 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 Gene3D - 233 259 - -
Trre16g02691 259 Gene3D - 161 191 - -
Trre16g02691 259 Gene3D - 192 216 - -
Trre16g02691 259 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Trre16g02691 259 ProSiteProfiles Zinc finger CCHC-type profile. 110 123 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 SUPERFAMILY Retrovirus zinc finger-like domains 225 255 IPR036875 GO:0003676|GO:0008270
Trre16g02691 259 SUPERFAMILY Retrovirus zinc finger-like domains 101 152 IPR036875 GO:0003676|GO:0008270
Trre16g02691 259 SUPERFAMILY Retrovirus zinc finger-like domains 163 210 IPR036875 GO:0003676|GO:0008270
Trre16g02691 259 Pfam Zinc knuckle 194 209 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 Pfam Zinc knuckle 109 123 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 Pfam Zinc knuckle 239 254 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 Pfam Zinc knuckle 136 151 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 Pfam Zinc knuckle 170 184 IPR001878 GO:0003676|GO:0008270
Trre16g02691 259 Gene3D - 107 157 - -
Trre16g02691 259 PANTHER COLD SHOCK DOMAIN PROTEIN 2 127 185 - -
Trre16g02691 259 MobiDBLite consensus disorder prediction 72 91 - -
Trre16g02691 259 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02691 Trre-Chr16 22332830 22333696 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Trre16g02691 CSD 8.7e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02691 K09250 - tpra:123881414 353.984