Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02679 ATGGCTATGCGAGAATCTTCCTCTTCTTCTAATTCATTCAGTTATGGATTCACCTATGATGTGTTCCTCAGCTTTAGAGGATCAGACACTCGCTATGGTTTTACCGGAAATCTCTACCAAGCTCTTCATAACAAAGGAATCCACACCTTCATTGACGATGAAGAGCTTCAAAGAGGACATGAAATCACACCATCACTTTTGGAGGCAATTGAAGAGTCAAGAATTGCCATAGTTGTGCTCTCTAAAAACTATGCATCTTCATCATTTTGCTTACATGAACTTGTCAAGATCCTTGATTGCATTAAGGGGAAGGGTAGGTTGGTTTGTCCAATCTTTTATGATGTGGATCCAACTGATGTGAGGAAGCAGACAGGATCTTACGGTGAAGCTTTAGCTATGCATGCAGAGAGATTCAATGATTGCTTGCCAAAATGGAAGATAGCTTTGCAACAAGTAGCTAACTTGTCTGGCTGGCATTTCAAAACTGGGGTTGGATATGAATACGAGTTTATTGGAAAGATTGTTGAACATGTTTCCAAGAAAATCAACCGTATTGCTTTACCCATTGCTGACTACCCAGTTGGACTAGAGCCTCATATGCTAGAAATAAATTCACTTCTCGATGTTGGGTCCGTTGATGAGGTCAACATGATTGGGATCCATGGAATTGGAGGGATAGGGAAAACAACACTTTCTATAGCGGTTTATAACTTAATTGCTGATCACTTTGACGCTTTGTGTTTTCTTGAAAATGTGAGAGAAAATTCAAACAAACACGGGTTACAACATCTCCAAGAGATTCTTCTTTCTGAAACACTTGGAGAGATGAAAATTAAGTTAACAAGTGTCAAACAAGGAATTTCAATAATAAAACATAGACTCCGGCAGAAAAAAGTTCTTTTGATTTTAGATGATGTTGACAAAATAGAACAACTGGAGGCCTTGGTTGGAGGGTCTGATTGGCTTGGTTCTGGAAGCAGAGTTATTATTACAACTCGAGACAAACATTTGTTGGAAAGTCATGGGATTAACATAACATATGAATTAGATGTGTTAGATGAGCAAGATGCTCTTCAATTGCTTACTTGGAAAGCTTTTAAGACAGAAAAATTCCATCCTAGTTACTTGGATGTCTTGAAACGTGTAGTAGCATATGCTTCAGGACTTCCATTGGCTTTAACAGTAATGGGTTCCAATTTATTTGGAAAGAATATACAAGAATGGGAATCTGCATTACAACGATATGAAATCATTCCTAATAAAGATATCCAAAACATACTCAAAGTAAGTTTTGATTCTTTGGAGGAAGATGAACAGCATGTTTTTCTTGACATAGCTTGTTTCTACACAGGAACAGAACATACATTGACAAGTGTAGAAAAGATGCTTCATGCTCATTATGATGCTTGCATGAAATATCATATTGGAGTATTGGTTGAAAAATCTCTCATGAAGATTAGTTGGTCTGGTCACTTCATTGTACATGACTTGATAGAGGACATGGCTAAAGCAATTGTTCGATTGGAATCACCAGACGATCCTGGAAAACGTAGTCGCTTATGGTTTCACGAAGATATAATTCAAGTTTTAGAAGACAATACAGGAACTAGTGCGATTAAAACCATATATCTGATGTGTGAAACTGAGGTAGAATTGGATGAATCGGCCTTCAAGAAGATGAAAAACCTCAAAACCCTCATTATTGAAGGTGTCCATTTTTCCAAAGGACCGAAATATCTTCCAAATAGTTTAAGAGTATTCAAATGGGAGGGATATCCTTCGGAATATTTACCACAAGATTTTCATCCAAAGAAACTTGCCATATTCAACTTACAAAAAAGTTGCATTACGTCACTCAAGTTGGCTGACTCATTGAAAAAGTTCTTGAATGTTAAAATTTTGAATTTTGATGAGGCAAATTGTTTGACAGAAATACCTGATGTCTCTTCTCTCTCAAATTTAGAAGATTTTTCATTTCAACGTTGTAAGAATTTGATTACAATTCATGAATCAGTTGGGTTACTGGATAAACTTAAAGTCTTGAGTGCCACAGGTTGTAGTAAGCTTAGAACATTTCCACCTATCAAATTGATGTCCCTTGAGAAACTCGACCTTTCATATTGCTTGAATCTCAAGAGTTTTCCAGAAATATTAGGGAAGATGGAAAATTTAACAGATCTTAGGTTGGAAGAAATTCCAATAATTGAATTGCCATGTTCATTCCTAAATCTTACTCATCTTCGAAGGTTACGACTATGTATGTGTGGAACGGTTAGTTTGCCAGGTAACGTTTTCATGATGCCAAATTTGGTTCAGGTTATAGTTGATGGATATAAAAGATGGGTATTTCTAAAACAATCCGAGGGTGGACAAAGAGTTATTTCAATGGTGTCTTCAAATGTAGAATGTCTTTATCTCGTAAGTTGCAAACTATCAGATGACTTTTTATCAACAAGTCTCACATGGTTTAGAAACGTGAAAGGATTAGACTTATCCAATAGTAATTTTACAATTCTTCCGGAATGCATTAAAGAATGTCATCTATTAAGGAATCTTTATTTGGATGAGTGCCGATATCTTCGAGAAGTTAGAGGAATACCGCCAAACTTGGAAATTTTTTCTGCACTACATTGTGAATCTTTGATCTTTCCAGAAATGTTACTGAATCAGGTTTTTTTTATATTATTATTAGGCTAA 2697 0.3604 MAMRESSSSSNSFSYGFTYDVFLSFRGSDTRYGFTGNLYQALHNKGIHTFIDDEELQRGHEITPSLLEAIEESRIAIVVLSKNYASSSFCLHELVKILDCIKGKGRLVCPIFYDVDPTDVRKQTGSYGEALAMHAERFNDCLPKWKIALQQVANLSGWHFKTGVGYEYEFIGKIVEHVSKKINRIALPIADYPVGLEPHMLEINSLLDVGSVDEVNMIGIHGIGGIGKTTLSIAVYNLIADHFDALCFLENVRENSNKHGLQHLQEILLSETLGEMKIKLTSVKQGISIIKHRLRQKKVLLILDDVDKIEQLEALVGGSDWLGSGSRVIITTRDKHLLESHGINITYELDVLDEQDALQLLTWKAFKTEKFHPSYLDVLKRVVAYASGLPLALTVMGSNLFGKNIQEWESALQRYEIIPNKDIQNILKVSFDSLEEDEQHVFLDIACFYTGTEHTLTSVEKMLHAHYDACMKYHIGVLVEKSLMKISWSGHFIVHDLIEDMAKAIVRLESPDDPGKRSRLWFHEDIIQVLEDNTGTSAIKTIYLMCETEVELDESAFKKMKNLKTLIIEGVHFSKGPKYLPNSLRVFKWEGYPSEYLPQDFHPKKLAIFNLQKSCITSLKLADSLKKFLNVKILNFDEANCLTEIPDVSSLSNLEDFSFQRCKNLITIHESVGLLDKLKVLSATGCSKLRTFPPIKLMSLEKLDLSYCLNLKSFPEILGKMENLTDLRLEEIPIIELPCSFLNLTHLRRLRLCMCGTVSLPGNVFMMPNLVQVIVDGYKRWVFLKQSEGGQRVISMVSSNVECLYLVSCKLSDDFLSTSLTWFRNVKGLDLSNSNFTILPECIKECHLLRNLYLDECRYLREVRGIPPNLEIFSALHCESLIFPEMLLNQVFFILLLG 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02679 898 Gene3D Ribonuclease Inhibitor 523 787 IPR032675 -
Trre16g02679 898 Gene3D Ribonuclease Inhibitor 791 883 IPR032675 -
Trre16g02679 898 Gene3D - 351 435 IPR042197 -
Trre16g02679 898 ProSiteProfiles TIR domain profile. 17 182 IPR000157 GO:0007165
Trre16g02679 898 SUPERFAMILY L domain-like 536 893 - -
Trre16g02679 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
Trre16g02679 898 Pfam TIR domain 19 183 IPR000157 GO:0007165
Trre16g02679 898 PRINTS Disease resistance protein signature 293 307 - -
Trre16g02679 898 PRINTS Disease resistance protein signature 386 400 - -
Trre16g02679 898 PRINTS Disease resistance protein signature 695 711 - -
Trre16g02679 898 PRINTS Disease resistance protein signature 217 232 - -
Trre16g02679 898 SMART till_3 18 155 IPR000157 GO:0007165
Trre16g02679 898 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 158 IPR035897 -
Trre16g02679 898 SUPERFAMILY "Winged helix" DNA-binding domain 422 531 IPR036390 -
Trre16g02679 898 Pfam NB-ARC domain 213 421 IPR002182 GO:0043531
Trre16g02679 898 Gene3D - 188 346 IPR027417 -
Trre16g02679 898 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 184 - -
Trre16g02679 898 SMART AAA_5 214 352 IPR003593 GO:0016887
Trre16g02679 898 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 716 IPR044974 GO:0006952
Trre16g02679 898 Gene3D - 14 187 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02679 Trre-Chr16 22240474 22244668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02679 13 752 WRKY Transcription Factor Family AT4G12020 31.128 4.48e-79 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02679 - - gmx:100780257 1085.86