Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02676 ATGGGTTCTATTGGAGTTCAAAGTTCAGAAACAGAAGTTGTCACCATTGATGTACTTGCAACCAAGTCTCTGATCGAAACAACCCATATTTATCTTGATGTCAGAACGGTGGAAGAGTTTCAGAAAGGGCATGTGGATGCAGAGAAGGTCATTAACATTGCATACATGTTTAATACACCTGAGGGGAGGGTGAAGAACCCAGAGTTTTTGAAGGAGGTTTCATCTCTTTGCAAGAAAGAAGATCACCTCATCGTGGGTTGTCAAAGTGGAGTGAGGTCTGTGTATGCAACTATTGATCTTCTTGCTGAAGGGTATAAGGATGTGTCCAACATGGGAGGAGGTTATTTGGATTGGGTTAAAAAGGAATTTCCTGTTAAGATAGTAAATGTGACCAAATAG 399 0.4085 MGSIGVQSSETEVVTIDVLATKSLIETTHIYLDVRTVEEFQKGHVDAEKVINIAYMFNTPEGRVKNPEFLKEVSSLCKKEDHLIVGCQSGVRSVYATIDLLAEGYKDVSNMGGGYLDWVKKEFPVKIVNVTK 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02676 132 Gene3D - 5 127 IPR036873 -
Trre16g02676 132 Pfam Rhodanese-like domain 26 120 IPR001763 -
Trre16g02676 132 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 13 125 IPR036873 -
Trre16g02676 132 CDD RHOD 30 119 - -
Trre16g02676 132 PANTHER THIOSULFATE SULFURTRANSFERASE 18 7 127 IPR044684 GO:0003824
Trre16g02676 132 SMART rhod_4 16 124 IPR001763 -
Trre16g02676 132 ProSiteProfiles Rhodanese domain profile. 29 127 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02676 Trre-Chr16 22218389 22220241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02676 3 125 Sulfurtransferasese or Rhodanese AT5G66170 55.285 9.92e-50 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02676 - K15692 gmx:100792251 227.639