Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02670 ATGGCTACTAAGTGCATGCATGTTTTTGATAGATTGATGTTTTCTGTCACTTGTTGGAAGAAAAGTAGGACACAAACTGGAAGAAGAAAGTTCCATAGGGATGTAGAGAAAGAAGAATTCCAGTATGCAAGTACTCAATGTCTTTCATCCTATTACAGTGTCTTTGTCGTTCGCCTTGCAATCATGGTTATGCTAGCCATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACAAAATCTCTAAATAGTTTGGCTTATGACCTGCGTTACGAACTTCTGCAACGTCCCATCTTGAGGATGTGGAACATTTTGAACTCTACTGCTGAAATCACAACTGCTCAGGTTAAGTTATCCGAGTATGTTATCAGAAGCCACAACAAGCTAGCCACTCAAGAAGATCATGTTGAGATGTATGAAGCCATGAGAGCTGTCACATGGGCACTGTTTTCTAGTCGAAAAGCTCTTAACTCGATAACTGTCAAATATGGAAACGGTTTTGTCCAGGCATTTCATAGAGACTTGAAGGATAATAATACTTTTTACATTTACACTGATCTTGCATATAACTTGACCAGTGAAGCTTTGAATGATAAAGACATTCATAACAACAAGACTGCGATTTGGTACCGGGAACAGCTTGATCCAGTTAGTGGCGAGAAGATTGGAAAAGCAATGAAAATTGCACCAGAAGACTCAATAAGTATAGCTGGCATGTCACAAGTACCTGACGGTGTAGCTTCGTGGCACGTTTCTGTGAGCAAGTTTACGGATTCACCGCTACTTTCAGCAGCATTGCCAGTTTGGGATTCTTCTAATAAGAGTATTGTAGCAGTTGTCGGTGTCACAACAGCGCTTTATAGTGTAGAGCAGTTAATGAAGGAACTAGTTGACAAGCACAGTGGTCATATGTATTTGACCTCTCAAAAGGGATATTTGCTTGCAACTTCCACAAATGACCCTTTACTGACAAATTCAACAAAGAAACCTAAGCTTAAAATGGCTGTTGATTGCGATAACGAAGTAATAAGAGAGGGAGCGATGTGGCTACAGAAAACCTATGGGAACAATTTCCCTCCAAGTCATGAGGTTCATGTAGAAAATGCCAAGCTAGGTCACCAGCAATATTACGTTGACTCGTTCTTTCTAAATTTGAAAAAGCTTCCTCTGGTAGGTGTAATAATCTTACCAAGGAAGCATATTATGGGGCAGGCAGATCAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCGTCATTGTGTATTATTGTCATTGGATGTTTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAATTAATCAGTCACCTGGAAGCAAGAAGGAAAGCCGAGGCATCAAGCAACTATAAAAGCCAATTTCTTGCAAATATGAGTCATGAATTACGGACACCGATGGCAGCAGTAATTGGATTACTTGACATTCTTTTGTCTGATGATTGTCTCACAAATGAACAATATGCAACCGTTACTCAAATAAGAAAATGTTCAACCACGTTGCTCCGTTTACTCAATAACATCTTGGATCTAAGCAAGGTGGAATCTGGAAAACTTGTCCTAGAAGATGCAGAATTTGACTTGGGAAAGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAGTGTAGAAATTATTTTAGACCTTTCTGATGATATGCCAAAGATAGTTCGGGGAGATTCTGATAGAGTTGTTCAAATTTTTGCAAATTTGATCAACAACTCAATCAAGTTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTATGGTGATAACGATAGTTTTACTGTGGAGAAGAAGAATTTGGTGTGTTCGCAGAAGACCATAACAAAGAAGCATGAAAATCATGCAAAGAAGACTTCTAATAATGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGTAAATGGGATTCGGTGTTTGAAAGCTTTGAGCAAGCTGACCTATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATTAAGATTATCAAAAAGGAAGGCCCAGGAACACTAATGCGATTATATCTGAAACTTGCCGCGCCAGTGGATGCCACAGAACAACATTGTCAAGTCGATTTTGCTAACAATAACTTAGTGGTACTTCTTGCACTACATGGTAACATGAGTAGATTAATTACATCTAAGTGGTTAAAGAAAAATGGCGTGGTCACTATGGAAGCATCTGAATGGAATGGATTAACACAAGTTCTAAATGAACTATTTCATGCAAAAACTCCTACTCATAACAATGACTTCGATGCACATTATTCAGCTCATCGGGGTCTGAAATCTAAACTGCTGAGCATACAAGAATTGACAAACCCAACATTTGTCATTGCCGTTGACGTTGATCTACTTGACTTGAGCACAGATATTTGGAAGGAACAACTTAACTTCCTACACAAGTACTACTCGAGAGCAAAATTTGTATGGTTACAAAACCATGACTCGTCCAATACTGTAAAGACGGAGCTTCGCAAGAAAGGACATATACTAACTGTCAACAAACCTCTTTACAAAGCAAAGATGATTCATATTTTGGAAGATGTCATAAAGGAAACAAATGTTGAGGTACAAAAGAAAAACATGATTACTCCAAGAACCATAGTGAAAGAGAGTGATTTGCATGAGAGCTTTGAAATTGATTATAATCATTGTGATGTTGCAAGCTCAGATGGTTCTGACATATCGGAAATTGGTAGTTCTAATCCATCATCACTATATCTGAAAAGTAACTGCTTATTAGGGCTAACTAATGAGTATATGGAACAAAATAGTTCTAGGAAAGAAGCATCCATTTCTAAAAGAGAAAAAGGTGAAGATTCTGATTATGGTAGGGTCAGTGGTTCAACTAAAGCCATGAATGGAAAGAAGTCTCTTGAAGGTTTGAGAATATTGCTTGCAGAAGACACAGTAGTAATTCAAAGGGTTGCAACCATAATGCTAGAAAAAATGGGAGCCATTGTTGTTGCTGTAGGTGATGGACAACAGGCAGTGGATGCTCTAAATGGCACGCTTGGTGTCGAAGATTGTAGAAAAGAGTCTCTCTTAAAGGAAAGGAACAAAGAAACATCCCAAACTGAGATTCTAAGTTTCCCTTCATATGACTTGATCCTTATGGATTGCCAGGTATTGTTGTAA 3306 0.3835 MATKCMHVFDRLMFSVTCWKKSRTQTGRRKFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHNKLATQEDHVEMYEAMRAVTWALFSSRKALNSITVKYGNGFVQAFHRDLKDNNTFYIYTDLAYNLTSEALNDKDIHNNKTAIWYREQLDPVSGEKIGKAMKIAPEDSISIAGMSQVPDGVASWHVSVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVEQLMKELVDKHSGHMYLTSQKGYLLATSTNDPLLTNSTKKPKLKMAVDCDNEVIREGAMWLQKTYGNNFPPSHEVHVENAKLGHQQYYVDSFFLNLKKLPLVGVIILPRKHIMGQADQRAFKTLVILISASLCIIVIGCFCILILTNGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDCLTNEQYATVTQIRKCSTTLLRLLNNILDLSKVESGKLVLEDAEFDLGKELEGLVDMFSVQCINHSVEIILDLSDDMPKIVRGDSDRVVQIFANLINNSIKFTLSGHIILRGWCENPNSYGDNDSFTVEKKNLVCSQKTITKKHENHAKKTSNNDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRLHGGTGLGLCIVRSLVNKMGGEIKIIKKEGPGTLMRLYLKLAAPVDATEQHCQVDFANNNLVVLLALHGNMSRLITSKWLKKNGVVTMEASEWNGLTQVLNELFHAKTPTHNNDFDAHYSAHRGLKSKLLSIQELTNPTFVIAVDVDLLDLSTDIWKEQLNFLHKYYSRAKFVWLQNHDSSNTVKTELRKKGHILTVNKPLYKAKMIHILEDVIKETNVEVQKKNMITPRTIVKESDLHESFEIDYNHCDVASSDGSDISEIGSSNPSSLYLKSNCLLGLTNEYMEQNSSRKEASISKREKGEDSDYGRVSGSTKAMNGKKSLEGLRILLAEDTVVIQRVATIMLEKMGAIVVAVGDGQQAVDALNGTLGVEDCRKESLLKERNKETSQTEILSFPSYDLILMDCQVLL 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02670 1101 SUPERFAMILY CheY-like 1016 1098 IPR011006 -
Trre16g02670 1101 Gene3D - 458 537 - -
Trre16g02670 1101 SMART HisKA_10 470 536 IPR003661 GO:0000155|GO:0007165
Trre16g02670 1101 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 583 734 IPR003594 -
Trre16g02670 1101 MobiDBLite consensus disorder prediction 980 1006 - -
Trre16g02670 1101 CDD HisKA 471 532 IPR003661 GO:0000155|GO:0007165
Trre16g02670 1101 MobiDBLite consensus disorder prediction 984 1000 - -
Trre16g02670 1101 PRINTS Bacterial sensor protein C-terminal signature 678 688 IPR004358 GO:0016310|GO:0016772
Trre16g02670 1101 PRINTS Bacterial sensor protein C-terminal signature 695 713 IPR004358 GO:0016310|GO:0016772
Trre16g02670 1101 PRINTS Bacterial sensor protein C-terminal signature 719 732 IPR004358 GO:0016310|GO:0016772
Trre16g02670 1101 PRINTS Bacterial sensor protein C-terminal signature 660 674 IPR004358 GO:0016310|GO:0016772
Trre16g02670 1101 FunFam Histidine kinase 1-like protein 458 537 - -
Trre16g02670 1101 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 457 537 IPR036097 GO:0000155|GO:0007165
Trre16g02670 1101 ProSiteProfiles Response regulatory domain profile. 1019 1101 IPR001789 GO:0000160
Trre16g02670 1101 SMART HKATPase_4 583 735 IPR003594 -
Trre16g02670 1101 Gene3D - 538 736 IPR036890 -
Trre16g02670 1101 PANTHER TWO-COMPONENT HISTIDINE KINASE 40 743 - -
Trre16g02670 1101 Gene3D - 1009 1099 - -
Trre16g02670 1101 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 525 733 IPR036890 -
Trre16g02670 1101 ProSiteProfiles Histidine kinase domain profile. 477 735 IPR005467 -
Trre16g02670 1101 Pfam His Kinase A (phospho-acceptor) domain 471 536 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02670 Trre-Chr16 22180700 22185807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02670 8 1099 Histidine Kinase Gene Family AT2G17820 63.115 0.0 1385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02670 - - gmx:100801970 1757.27