Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02664 ATGGCCGATTCACCCCTCAACGAAGGAATTCAAGGTCCCCTTCACCTTCAGCCTGGAAAGCTCAATAAAGATCAAGATCAAGATCGAGGTCTGTGCCAAGACAAAGGCCAAGATCCGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGAAGTCCTGAAAGGTTGGTCCTTTTATGTTTTTGTTGATAATTCTGTTGTAGTGGCCAATGCTACCAATCCTGGTAATACACTTTATGTTACTGGTCTATCTTCAAGGGTGACCGAGAGGGACCTAGAGGATCATTTTAATAAAGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCACGTACCCGAATTTCATGTGGTTTTACTTTTGTTACAATGGATTCCCACGAGGATGCTGAACGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTAGAACGAACTACATTGCATCAGTTATGTTGGCAACAATCAGAGATGACCAGTTCATATATCCATGCAAATTTAGTGAAGCTGCTTGATCAATGGCAAGCAAGCTTAAACAGCTAA 558 0.4301 MADSPLNEGIQGPLHLQPGKLNKDQDQDRGLCQDKGQDPTPEAVADQGLEVLKGWSFYVFVDNSVVVANATNPGNTLYVTGLSSRVTERDLEDHFNKEGKVASCFLVVEPRTRISCGFTFVTMDSHEDAERCIKYLNQSVLEGRYITVERTTLHQLCWQQSEMTSSYIHANLVKLLDQWQASLNS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02664 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 153 IPR000504 GO:0003723
Trre16g02664 185 CDD RRM_SF 77 149 - -
Trre16g02664 185 Gene3D - 62 165 IPR012677 -
Trre16g02664 185 MobiDBLite consensus disorder prediction 21 35 - -
Trre16g02664 185 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 70 151 - -
Trre16g02664 185 SUPERFAMILY RNA-binding domain, RBD 63 150 IPR035979 GO:0003676
Trre16g02664 185 SMART rrm1_1 76 149 IPR000504 GO:0003723
Trre16g02664 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 146 IPR000504 GO:0003723
Trre16g02664 185 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02664 Trre-Chr16 22123807 22125163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02664 36 152 Eukaryotic Initiation Factors Gene Family AT3G11400 31.092 6.47e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02664 K12897 - zju:107408932 152.91