Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02648 ATGAAGCTTTCCACCTTTGTTAAATCTTTTTATGTCTGTTCTTTTCTAGTTTTGTATCATCCATTTGTTGTGACAGCTACAATTAAACCTCTTTATAAAAACTATTCATTTCCTGCTGTTATTGCATTTGGTGATTCAATATTAGATACTGGTAATAACAACTATATTGCAACAATAGTGAAGGCGAATTTCAAACCGTACGGGAAGGATTTTATTGGAGGAAAACCGACAGGAAGGTTTTCTAATGGAAGAATCCCTTCTGATTATTTCCTTGAATACCTTGGTATTAAGGAGGCTATGCCAGCTTATCTTGATCCAAATTTGAGTACTGATGACCTCTTAACTGGAGTGTGTTTTGCATCATCTGGTTCAGGATATGATCCTCTTACAATTGAACTAGCATCAGCGTTATCAACAGAAGATCAACTAGATTTGTTCAAAGAGTATATTGGTAAATTGAAGGCAGCTGTGGGAGAAAATAGGACAACTGAGATTATTGCAAATAGCATAATTATTATAAGCATGGGAACCAATGATATTTCAGGATCATATTATTTGTCACCCTTCAGAAAGCATGAGTATGATATAGAAAAGTATACAGATATGCTTATTAGTGCCAATTCAAAATTTGTTGAGGATCTTTATGAATTGGGAGCAAGAAGGATTGGAGTGTTCAGTTTATCACCAGTTGGATGTGTGCCACTTCAAAGAACCATAAAAGGAGGCATAAGAAGGAATTGTGTAGAAAATGTAAATGAGGGAGCATTGATTTTCAACTCCAAGCTTTCCTCTTCACTCATAGATCTATCAAAAAAACTTCCAGATTCCAGGGTTGTCTACCTTGAAAATTTTAGTCAATTGCATGACATGATCATAAACCACAATAACTATGGATTTGAAAATGGGGATGGTTCATGTTGTGGCATTGCAAATATAGAACTACTCTGTAGTTCTTTCACCTTAAAAGTTTGTCCAGATACCACTCAATATGTGTTCTGGGACAGTTATCATCCTACAGAGAAAGCTTACAAAATACTTGTCACAAAAATATTAGATAACAAGATTGATGAGTTTGTTTGA 1080 0.3472 MKLSTFVKSFYVCSFLVLYHPFVVTATIKPLYKNYSFPAVIAFGDSILDTGNNNYIATIVKANFKPYGKDFIGGKPTGRFSNGRIPSDYFLEYLGIKEAMPAYLDPNLSTDDLLTGVCFASSGSGYDPLTIELASALSTEDQLDLFKEYIGKLKAAVGENRTTEIIANSIIIISMGTNDISGSYYLSPFRKHEYDIEKYTDMLISANSKFVEDLYELGARRIGVFSLSPVGCVPLQRTIKGGIRRNCVENVNEGALIFNSKLSSSLIDLSKKLPDSRVVYLENFSQLHDMIINHNNYGFENGDGSCCGIANIELLCSSFTLKVCPDTTQYVFWDSYHPTEKAYKILVTKILDNKIDEFV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02648 359 FunFam GDSL esterase/lipase APG 30 355 - -
Trre16g02648 359 Gene3D SGNH hydrolase 28 355 IPR036514 -
Trre16g02648 359 PANTHER GDSL ESTERASE/LIPASE EXL3 19 350 - -
Trre16g02648 359 CDD SGNH_plant_lipase_like 38 353 IPR035669 -
Trre16g02648 359 Pfam GDSL-like Lipase/Acylhydrolase 40 347 IPR001087 GO:0016788
Trre16g02648 359 SUPERFAMILY SGNH hydrolase 40 352 - -
Trre16g02648 359 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 40 51 IPR008265 GO:0006629|GO:0016298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02648 Trre-Chr16 21963228 21964944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02648 34 353 Pollen Coat Proteome AT1G75910 41.538 9.57e-83 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02648 - - mtr:11443183 574.318