Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02643 ATGCATGTTTGCAAAACACAAGAAAAAGAACTCACCGTGGCATATAGCAACAATATAGGTAGAATGTGGGGCTACTCGACTAATTTGATGTTATACGACGATCCTTGGAAGATCAAGAAAGTGTTGGAACATAGTGATGTTAACCGTTTGAGTAGACTGTTGCTAGATAAAAAATTGGTTGAGGATTTGGTGTTGCCTGTATTGGATGCTAATGATGCTGCTCTTGTGAAAGGAATTCAAGTGAAAATATATGATATTGAGACTAACTCCATGCACTTTCTCAAACTGAAGAGATGGGCTTGTGGAAGCTATGTATTCAACGATGGATGGATCAAAGATTTTGTAGCTAGAAGAAGTTTACAAAAAGGGGATGAAATTGGTCTTCATTGGGATCAATACAACCGACACTTCAATTTCTCTGTTCTTCGGGTCTATCAGGATCAACACTAG 450 0.3822 MHVCKTQEKELTVAYSNNIGRMWGYSTNLMLYDDPWKIKKVLEHSDVNRLSRLLLDKKLVEDLVLPVLDANDAALVKGIQVKIYDIETNSMHFLKLKRWACGSYVFNDGWIKDFVARRSLQKGDEIGLHWDQYNRHFNFSVLRVYQDQH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02643 149 CDD B3_DNA 36 143 IPR003340 GO:0003677
Trre16g02643 149 SUPERFAMILY DNA-binding pseudobarrel domain 34 142 IPR015300 -
Trre16g02643 149 Gene3D - 35 148 IPR015300 -
Trre16g02643 149 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02643 Trre-Chr16 21937619 21938068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02643 38 131 B3 DNA Binding Superfamily AT3G24650 34.021 5.95e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02643 - - cam:101505348 147.132