Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre16g02642 | ATGTCAGTGCTGATAGTCACTAGTTTAGGGGACCTTGTAATCGATTTACACACTCAAAAGTGTCCCTTAACCTGCAAGAACTTCTTAAAGCTTTGCAAGATTAAGTACTATAATGGTTGTTTATTTCACACTGTTCAAAAGGATTTCACCGCCCAAACTGGTGATCCAACTGGAACTGGCAATTCTGGTGATTCCATCTACAAGTTTCTTTATGGTGATCAAGCTCGATTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCTAAGACTGGAACTGTTGCCATGGCAAGTGCCGGAGAGAATATGAATGCTTCACAGTTCTATATAACTCTACGCGATGACCTTGATTACCTAGACGGAAAGCACACAGTTTTTGGCGAGGTAGCCGAAGGATTTGAGACGTTGACTAGAATAAATGAGGCTTATGCGGATGGAAAGGGCAGACCATTTAAAAATATCCGAATCAAGCACACTTACATCCTGGAGGATCCCTATGATGATCCTCCTCAGCTACCTGACTTCATTCCTGAAGGTTCACCAGAAGGAAAACCTAAAGACGAGGTTGATGATGAAGTCCGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCCGGAGAACTTGAAGAAGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAGCCTCCAGATAATGTACTATTTGTCTGTAAATTGAATCCGGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACAGGCATGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTTGCAAAACTGTGGTCACAATACATGCGAAAAGATAATAAGGGTGGTGGTTGCTTCAAATGTGGTTCCACAGATCATATTGCCAAGGATTGCACTGGAGATGCTACAATGAAACAATCCACAAAATACATCTTGAAGGACAATAATTCCCAACGTGGTGGACATGATGCGAGATATGAAATGGTTTTTGATGGAGATAACACAGAAAGTCCAAGGCGTGAAACAAAACACCAAAGACATGACAGGGATGACCGAGATGATAAAATAGGTAGGAGGGAAAATGTTAAAGACCATAGTCATAGAGGTCGTAGTGATCAGGAGATGGCAGGCTCAAATAACAGAGATAGGTATGCCAACAGAAGCAGAGGGCTTGAAGGAAATGGAGAGGATAAAGCACGACTGGAAAGAGGTGCAAGAGGTTCGGATTCTTTTGCTGGCAAGAAAGACAGAGAAAAGCAAATGGGAAGACAGAGAGATGATGACTACCGACGGAAAGATGAGCTAGTTTCGAGGAAAAGAGACTTAGGTGATAGCTACACAGAAAGTCGGGATAGTCGAGATGATAGGAGAAAAACAGATGCCATCCATTTGAATAAGAGGAATGACAAAGATTACAGGAAGAGAACGGAAGACAGTGGAAGGCAAGATTTGAAGATTGATTCTGGAAGAAGAAAACGAAGCCCAGATGTTGACGATTACAAACGTAGAAGGAGTGATGAGGATTGCAGAGAAGATTTAAAGATTGATTCCAGACGAAGAAAACAAAGCCCAGATAATGGGGACTACAAACGTGGAGGGGACCATGAGGATTACAAACATAGGAGGGAAAATCGTGGACATAGAAGACATGATACTGATAGAAGGCATCATGGTGACAAAAGATGA | 1848 | 0.414 | MSVLIVTSLGDLVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGNSGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENMNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPYDDPPQLPDFIPEGSPEGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYMRKDNKGGGCFKCGSTDHIAKDCTGDATMKQSTKYILKDNNSQRGGHDARYEMVFDGDNTESPRRETKHQRHDRDDRDDKIGRRENVKDHSHRGRSDQEMAGSNNRDRYANRSRGLEGNGEDKARLERGARGSDSFAGKKDREKQMGRQRDDDYRRKDELVSRKRDLGDSYTESRDSRDDRRKTDAIHLNKRNDKDYRKRTEDSGRQDLKIDSGRRKRSPDVDDYKRRRSDEDCREDLKIDSRRRKQSPDNGDYKRGGDHEDYKHRRENRGHRRHDTDRRHHGDKR | 615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre16g02642 | 615 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 245 | 315 | IPR000504 | GO:0003723 | |
| Trre16g02642 | 615 | MobiDBLite | consensus disorder prediction | 167 | 189 | - | - | |
| Trre16g02642 | 615 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 7 | 161 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre16g02642 | 615 | SMART | rrm1_1 | 244 | 317 | IPR000504 | GO:0003723 | |
| Trre16g02642 | 615 | MobiDBLite | consensus disorder prediction | 384 | 615 | - | - | |
| Trre16g02642 | 615 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 | 1 | 506 | IPR035542 | - | |
| Trre16g02642 | 615 | Pfam | Zinc knuckle | 338 | 353 | IPR001878 | GO:0003676|GO:0008270 | |
| Trre16g02642 | 615 | Gene3D | - | 1 | 172 | IPR029000 | - | |
| Trre16g02642 | 615 | ProSiteProfiles | Zinc finger CCHC-type profile. | 339 | 352 | IPR001878 | GO:0003676|GO:0008270 | |
| Trre16g02642 | 615 | MobiDBLite | consensus disorder prediction | 439 | 595 | - | - | |
| Trre16g02642 | 615 | CDD | cyclophilin_RRM | 4 | 169 | IPR035538 | - | |
| Trre16g02642 | 615 | FunFam | Peptidyl-prolyl cis-trans isomerase | 182 | 323 | - | - | |
| Trre16g02642 | 615 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 4 | 159 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre16g02642 | 615 | SUPERFAMILY | Cyclophilin-like | 1 | 176 | IPR029000 | - | |
| Trre16g02642 | 615 | CDD | RRM_PPIL4 | 240 | 322 | - | - | |
| Trre16g02642 | 615 | SMART | c2hcfinal6 | 338 | 354 | IPR001878 | GO:0003676|GO:0008270 | |
| Trre16g02642 | 615 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 16 | 31 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre16g02642 | 615 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 92 | 107 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre16g02642 | 615 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 121 | 136 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre16g02642 | 615 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 42 | 54 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre16g02642 | 615 | Gene3D | - | 182 | 324 | IPR012677 | - | |
| Trre16g02642 | 615 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 243 | 321 | IPR000504 | GO:0003723 | |
| Trre16g02642 | 615 | MobiDBLite | consensus disorder prediction | 384 | 431 | - | - | |
| Trre16g02642 | 615 | FunFam | Peptidyl-prolyl cis-trans isomerase | 1 | 172 | - | - | |
| Trre16g02642 | 615 | SUPERFAMILY | RNA-binding domain, RBD | 229 | 330 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre16g02642 | Trre-Chr16 | 21929879 | 21937087 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre16g02642 | 7 | 166 | U-box Gene Family | AT5G67530 | 40.625 | 2.89e-30 | 124 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre16g02642 | K12735 | - | gmx:100776900 | 917.531 |