Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02640 ATGGAAGATGTTTGGAAAGACATCAACCTCCCTTCCTTAAACAACAATATGAGCACAACAGTTTCTTCACCTTCCTTAAAGACACCAACTTCTCTTCATTCCTCCATTAACCTTAACTCTCTACCTGAGTTCCATTTCGACCCTCTTGAACACAAGAACTTGCAATTAGAGCAGAGTTACCACCAAAATAGTAGTGTCTCAAAAGTTGAAGATTTATTGAACAACACAATAGAAAGAAGAAATAAGAGAATAATGAAGAATAGAGAATCTGCTACACGGTCAAGGGCAAGAAAGCAGGAAAGCATTGCTTATATATTTGAGCTGAAGAAAAAAGTGAAGAATTTGGAAGAAGAGAATGCCAAACTTAAAAGACAACAACATTTGTGTGATGCCGCAGCCAAGCAGCAGAGGAATGGAAATCTGTATAGAACATCAACAGCTCCATTTTAA 450 0.3733 MEDVWKDINLPSLNNNMSTTVSSPSLKTPTSLHSSINLNSLPEFHFDPLEHKNLQLEQSYHQNSSVSKVEDLLNNTIERRNKRIMKNRESATRSRARKQESIAYIFELKKKVKNLEEENAKLKRQQHLCDAAAKQQRNGNLYRTSTAPF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02640 149 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Trre16g02640 149 SUPERFAMILY Leucine zipper domain 79 129 IPR046347 GO:0003700|GO:0006355
Trre16g02640 149 Gene3D - 77 137 - -
Trre16g02640 149 SMART brlzneu 75 142 IPR004827 GO:0003700|GO:0006355
Trre16g02640 149 Pfam bZIP transcription factor 79 125 IPR004827 GO:0003700|GO:0006355
Trre16g02640 149 Coils Coil 98 135 - -
Trre16g02640 149 CDD bZIP_plant_BZIP46 79 128 - -
Trre16g02640 149 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 46 148 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02640 Trre-Chr16 21909196 21910552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02640 71 149 bZIP Transcription Factor Family AT3G56850 47.561 3.84e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre16g02640 bZIP_1 9.5e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02640 K14432 - gmx:102667912 117.472