Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02628 ATGGTTGATGATAAGAATGCATCTGCACATAATATGTTGTTGGGATTCATTGCAGGCATTTCAACAGTTATGGCATTGACCTTATTGTTCTGCCTTTTCTGGAAAAGGATCATTCCATTTCTTAAACAACCTAAGACTTTGAAAGGAAAGCAATTTAAAACCTTGAAATATGACAAAATATCTTTAAGGTGTTTTAATCTTGAGGAACTAGAGAGAGCTACACAAAATTTTAGCCAAGATTGCTTATTGGGTTCTGGTGCATTTGGTAATGTCTACAAAGGAACTTTTGAGTTAGAAGGAATACTAGCCATAAAGAGATCTCATTCTGAATCATTCTTAAGTATGGAGGAATTCAGAAATGAAGTTAGGCTTCTTTCAGCAGTAAAACATAAGAATCTTATTGGTCTTGTTGGATATTGTGACGAACCAGAACGAGATGGAGCAAAAATACTAGTTTATGAATATGTACCAAATGGTTCACTCTTGGAGTACATGATGGGAAACAGAAGGAGAAGCTTGACTTGGAAGCAAAGAATAAACATAGCAATAGGAGCAGCAAAAGGCATAGCTTATTTGCATGAAGAGGTGAAACCAAGCATAATTCATCGTGACATCAAACCAAGTAACATACTATTAGGGGAATGTTTTGAGGCTAAGGTTTCAGATTTTGGGTTGGTAAAATCAGGGCCTACAGGTGATCAATCACATGTCAGTAGCCAAATCAAAGGGACACCAGGATACCTTGACCCTGCCTATTGTTCAAGCTGTCATTTGACCAAATTTAGTGATGTGTATAGCTTTGGTGTCATACTTTTGCAACTTATTTCAGCTAGACCTGCTGTGGATAGTGCTGAAAATCCAAGCAACCAACATATTATTGATTGGGCAAGACCTAGCATAGAGAAAGGTAACATTGAAGAAATCATGGATGCAAATTTATTTTGTGAAAGTGAGCCATGTGATATGAAAGTTATGCTACAAATGGGGCAACTTGGTATAAGATGTGTGGCTCAAGAACCAAAACATCGTCCAACAATGACCCAAGTTTGTAAAGAACTAGAGCAAGCCCTTTACTCAAATGATAGATTCACTAACAAGGATTCAGAAACCAATGGATCATTGCAACATTATGATTTTTCACAGAGCTATAACAATTTGAGGAGAATATAA 1170 0.3667 MVDDKNASAHNMLLGFIAGISTVMALTLLFCLFWKRIIPFLKQPKTLKGKQFKTLKYDKISLRCFNLEELERATQNFSQDCLLGSGAFGNVYKGTFELEGILAIKRSHSESFLSMEEFRNEVRLLSAVKHKNLIGLVGYCDEPERDGAKILVYEYVPNGSLLEYMMGNRRRSLTWKQRINIAIGAAKGIAYLHEEVKPSIIHRDIKPSNILLGECFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSCHLTKFSDVYSFGVILLQLISARPAVDSAENPSNQHIIDWARPSIEKGNIEEIMDANLFCESEPCDMKVMLQMGQLGIRCVAQEPKHRPTMTQVCKELEQALYSNDRFTNKDSETNGSLQHYDFSQSYNNLRRI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02628 389 SMART serkin_6 77 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02628 389 FunFam Putative LRR receptor-like serine/threonine-protein kinase 46 155 - -
Trre16g02628 389 SUPERFAMILY Protein kinase-like (PK-like) 58 354 IPR011009 -
Trre16g02628 389 Gene3D Phosphorylase Kinase; domain 1 41 155 - -
Trre16g02628 389 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 156 360 - -
Trre16g02628 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Trre16g02628 389 CDD STKc_IRAK 83 355 - -
Trre16g02628 389 Gene3D Transferase(Phosphotransferase) domain 1 156 380 - -
Trre16g02628 389 Pfam Protein tyrosine and serine/threonine kinase 82 353 IPR001245 GO:0004672|GO:0006468
Trre16g02628 389 PANTHER OS01G0750732 PROTEIN 56 367 - -
Trre16g02628 389 ProSiteProfiles Protein kinase domain profile. 77 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02628 389 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02628 Trre-Chr16 21863431 21866551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02628 63 371 Receptor kinase-like Gene Family AT1G30570 40.453 4.11e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g02628 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02628 - - gmx:106794267 588.956