Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02620 ATGGCCGATTCACCCCCTCAACGAAGGAATTCAAGGTCCCCTTCACCTTCGCCCTGGAAAGCTCAATCAAGATCAAGATCAAGATCGAGGTCTGTGCCAAGACAAAGGCCAAGATCCGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGAAGTCCTGAAAGGGTGGCCAATGCTACCAATCCTGGTAATACACTCTATGTTACTGGTCTATCTTCAAGGGTGACGGAGAGGGACCTAGAGGATCATTTTAATAAAGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCACGTACCCGAATTTCACGTGGTTTTGCTTTTGTTACAATGGATTCCCACGACGATGCTGAACGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGCTCTCGTGGTGACCATCGAGGTGATCGCGGTGATCGTGGTGACTTTCGTGGGGACCATCGTGGTGACTTTCGTGGTGACCACCGTGGTGACCATCGTGGTGATTTTCGTGGTGACCATCGCGGTGACCGGGGAAGGTATCGTGGCGGTTCTGGTCGTGGCGATTACTCATATCGTAGGTCTCCAAGGCGTTCACCATACCGTGGAGGCCACGATCATTCACCACAACACTCACCCTATGTTGGAAGGTCTAGGAGGGAGAGATCTAGGTCCATTCCTCAGTCTCCTTATAGCCCAGAGAGAAGGTATGCTGGTGGATCTAGGTTTGAAATCGGATTCCCTTGCCCTATCTTATCATCTTCAACTCATCCAATATCTATGACTGCATCCAACCTCTTAACAATTAGAACCTCTCGGATTTGA 906 0.4901 MADSPPQRRNSRSPSPSPWKAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERVANATNPGNTLYVTGLSSRVTERDLEDHFNKEGKVASCFLVVEPRTRISRGFAFVTMDSHDDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGSRGDHRGDRGDRGDFRGDHRGDFRGDHRGDHRGDFRGDHRGDRGRYRGGSGRGDYSYRRSPRRSPYRGGHDHSPQHSPYVGRSRRERSRSIPQSPYSPERRYAGGSRFEIGFPCPILSSSTHPISMTASNLLTIRTSRI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02620 301 MobiDBLite consensus disorder prediction 218 232 - -
Trre16g02620 301 Gene3D - 3 147 IPR012677 -
Trre16g02620 301 MobiDBLite consensus disorder prediction 1 66 - -
Trre16g02620 301 MobiDBLite consensus disorder prediction 33 51 - -
Trre16g02620 301 SUPERFAMILY RNA-binding domain, RBD 55 171 IPR035979 GO:0003676
Trre16g02620 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Trre16g02620 301 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 48 262 - -
Trre16g02620 301 MobiDBLite consensus disorder prediction 139 267 - -
Trre16g02620 301 MobiDBLite consensus disorder prediction 1 26 - -
Trre16g02620 301 CDD RRM_SF 65 137 - -
Trre16g02620 301 SMART rrm1_1 64 137 IPR000504 GO:0003723
Trre16g02620 301 MobiDBLite consensus disorder prediction 160 211 - -
Trre16g02620 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Trre16g02620 301 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 147 - -
Trre16g02620 301 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02620 Trre-Chr16 21761604 21766570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02620 60 125 Eukaryotic Initiation Factors Gene Family AT3G11400 39.394 1.54e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02620 K12897 - gmx:100800398 206.068