LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g02615	ATGAATTTTAATTCTTCCAAGTATATTTCCCCTTTTTCAGAATCAATTTTACCAGACAATCAATCACCTGATTGGAACAACAAAGCTGACAATGCATGGCAACTAACAGCAGCAACATTAGTGGGCCTACAAACTGTTCCCGGGCTTGTAATACTTTATGGCAGCATGGTTAAGAAAAAATGGGCCGTAAATTCAGCCTTCATGGGCCTATATGCATTTTCAGCTGTGTTAGTTTGTTGGGTTTTATGGGCCCATCAAATGGCATTTGGAAACAAGTTTTTGCCTTTTGTTGGAAAGCCCAATTTTGCTTTGACTCAAAAGTTTCTACTTTCAAAGGCATCAACACAATATTATTTACCAATGGCTGATTTTGTTTTCTATCAATTTGCTTTTGCTGCAATTACTATTGTGTTGCTTGCAGGATCTTTGCTTGGGAGAATGAATTTTTTTGCATGGATGTTGTTTGTTCCTATGTGGCTTACATTTTCTTATACCATTGGTGCTTTCACTATATGGGGTAATGGCTTCCTTGAAGGGAAAATAATTGATTATGCTGGTGGATTTGTAATTCATTTATCCTCTGGTGTTGCTGGTTTTACAGCTGCTTATTGGGTTGGTCCAAGAACTTCAGAGGATAGGAAAAATTTCCCACCAAATAACATAATTCACATGCTTGGAGGTGCAGGGTTGTTATGGATGGGTTGGACAGGGTTTAATGGTGGTGCACCATTTCAAGTGGGAGAGGTTACATCCTTAGCAATATTCAATACCCATTCGTGCACTGCCACAAGCATTCTTGTTTGGATTTCTCTAGATATGATTGTATACAAGAAGGGCTCATTGATAGGTTCTGTCCAAGGAATGATGACTGGCCTTGTTTGCATCACACCAGGTGCAGGATTGGTGGATCCATGGGCAGCAATATTGATGGGAGCTTTGTCAGGTTCAATTCCATGGTACACAATGATGGTGTTACACAAAAGACTACCATTTTTTCAAAATGTAGATGATACATTAGGAGTTTTTCACACTCATGCAGTTGCTGGTATTCTTGGGGGAATCCTTTCTGGTGTCTTTGCCAAGCCCAAACTTTTAAGGATGCTTTATGGGCCTAAAACTTCTTATGGGCCTGGCTTATTTTATAGTTATTTTGATGATAATATAAACCTAGGAATTAGGCAAATATTGTATCAATTACTAGGAGCAATTTTTATTACTATTTGGAATGTTGTTATTACTAGTCTCATTTGTATTATTGTAAGTAACATTGTGGACCTTCGAATGCATGAAGAAGACCTTGAAGTTGGTGATGATGCTGCTCATGGAGAAGAAGCTTATGTATTATGGGGTGATGGAGAAAGCATGATACTCCCACTTCGTCTACATAAAAGTACTCCAACAATTCTTTCCATTTCTCACCAAAGACATTCAATTCCTATCAATAAAATTGATGAATAA	1458	0.3793	MNFNSSKYISPFSESILPDNQSPDWNNKADNAWQLTAATLVGLQTVPGLVILYGSMVKKKWAVNSAFMGLYAFSAVLVCWVLWAHQMAFGNKFLPFVGKPNFALTQKFLLSKASTQYYLPMADFVFYQFAFAAITIVLLAGSLLGRMNFFAWMLFVPMWLTFSYTIGAFTIWGNGFLEGKIIDYAGGFVIHLSSGVAGFTAAYWVGPRTSEDRKNFPPNNIIHMLGGAGLLWMGWTGFNGGAPFQVGEVTSLAIFNTHSCTATSILVWISLDMIVYKKGSLIGSVQGMMTGLVCITPGAGLVDPWAAILMGALSGSIPWYTMMVLHKRLPFFQNVDDTLGVFHTHAVAGILGGILSGVFAKPKLLRMLYGPKTSYGPGLFYSYFDDNINLGIRQILYQLLGAIFITIWNVVITSLICIIVSNIVDLRMHEEDLEVGDDAAHGEEAYVLWGDGESMILPLRLHKSTPTILSISHQRHSIPINKIDE	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g02615	485	PANTHER	AMMONIUM TRANSPORTER MEP2	18	454	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Trre16g02615	485	FunFam	Ammonium transporter	15	449	-	-
	Trre16g02615	485	NCBIfam	ammonium transporter	30	446	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Trre16g02615	485	Pfam	Ammonium Transporter Family	32	446	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Trre16g02615	485	SUPERFAMILY	Ammonium transporter	25	427	-	-
	Trre16g02615	485	Gene3D	Ammonium transporter AmtB like domains	12	449	IPR029020	-
	Trre16g02615	485	ProSitePatterns	Ammonium transporters signature.	183	208	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Trre16g02615	485	PRINTS	Rhesus blood group protein signature	128	144	IPR002229	GO:0005886
	Trre16g02615	485	PRINTS	Rhesus blood group protein signature	222	240	IPR002229	GO:0005886
	Trre16g02615	485	PRINTS	Rhesus blood group protein signature	253	275	IPR002229	GO:0005886
	Trre16g02615	485	PRINTS	Rhesus blood group protein signature	346	362	IPR002229	GO:0005886

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g02615	Trre-Chr16	21736911	21739599	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g02615	121	454	Inorganic Solute Cotransporters	AT2G38290	57.612	1.88e-132	385

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g02615	K03320		-	gmx:100815876	764.992