Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02585 ATGGTTATTTCTTCTGATGAGAACAACTCCAATGCAATGATGCCCAAAAATTTTCAAGGAGGGATGGATCAAAAGGGTGCTGGTGGTGGAAGAATGGTTAGGAAGAACAACAGAAGAACTTTGAGTGAGATCAATCAAAATTTAGTGCAAGGACGACCTTACCCTTGTGTTGTTAACAAGAGGGTGTTGATGTCTGATAAACATGAGATTTGTGAAAAGAAACAGGCTGATCTGGGACATCGACCCATCACGAGGAGGTTTGCTGCAAAAATTGCTGATTCACAACAATCTAATGTTGAGAAAGTTAAGAATTCAAATCCATTGATTTCGAATGAGTCTGGAAATGCAATTGCTATTGATGATGAGCACAAATCACCAGCAGACCAACCAATGCCTATGACTTTAGAATCAACAGACTCAATGCACATTGATCCACACGAGATGGAGGAAGTTGAGATGGAGGATATTAATGGAGAGATGATTTTGGACATTGATAGCTGTGATGCAAATAACTCCCTTGCTGTTGTGGAATATATTGAAGATCTTCATTCTTACTATAGACAAGTTGAGTTTATTGGTTGTGTTTCACCACACTATATGGCAGAACAAGTTGACCTTAATCAGAGGATGAGGGCTATACTAGTTGACTGGCTTATTGAGGTGCATGACAAATTTGGTCTCATGCAGGAGACATTGTTTCTTACAATTAATCTCATAGACAGATTCTTGGCTAAGCAAAATGTTGTAAGAAAGAAACTCCAGCTGGTTGGTCTTGTTGCCATGCTTTTGGCATGCAAGTATGAGGAAGTTGATATTCCCGTTGTTTTGGATCTAATCTATATATCCGATAACGGTTACACAAGGAAGGATATTCTCGATATGGAGAAATTGATGCTGAACACATTGCAGTTTAACATGTCTCTGCCAACTACATATGTTTTTATGAGAAGATTTCTGAAGGCTGCTCAAGCTGACAACAAACTTGAGTGGGTAGCTTTTTTCTTGGTAGAGCTATCTCTGGTGGAATATGAGATGCTGAAGTTTCCACCATCCTTGATGGCTGCCGCTGCTGTGTATACTGCTCAATGCACTGTTAGTGGTTTCAAACATTGGAATAAGACTTGTGAATGGCACACAAACTACTCTGAAGATCAGTTGTTGGAGTGCTCTATGAAGATGGTTGGATTCCACCAAAAAGCTGGAACTGGGAAACTGACAGGAGTATATAGGAAGTATGGCTCGGCAAAATTTAGCTTCGCAGCGAAATGTGATCCAGCATGTTTTCTTTTGAAGAACAAGAACCAATCATAG 1311 0.3982 MVISSDENNSNAMMPKNFQGGMDQKGAGGGRMVRKNNRRTLSEINQNLVQGRPYPCVVNKRVLMSDKHEICEKKQADLGHRPITRRFAAKIADSQQSNVEKVKNSNPLISNESGNAIAIDDEHKSPADQPMPMTLESTDSMHIDPHEMEEVEMEDINGEMILDIDSCDANNSLAVVEYIEDLHSYYRQVEFIGCVSPHYMAEQVDLNQRMRAILVDWLIEVHDKFGLMQETLFLTINLIDRFLAKQNVVRKKLQLVGLVAMLLACKYEEVDIPVVLDLIYISDNGYTRKDILDMEKLMLNTLQFNMSLPTTYVFMRRFLKAAQADNKLEWVAFFLVELSLVEYEMLKFPPSLMAAAAVYTAQCTVSGFKHWNKTCEWHTNYSEDQLLECSMKMVGFHQKAGTGKLTGVYRKYGSAKFSFAAKCDPACFLLKNKNQS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02585 436 MobiDBLite consensus disorder prediction 1 17 - -
Trre16g02585 436 MobiDBLite consensus disorder prediction 1 32 - -
Trre16g02585 436 Pfam Cyclin, C-terminal domain 309 424 IPR004367 -
Trre16g02585 436 SUPERFAMILY Cyclin-like 170 306 IPR036915 -
Trre16g02585 436 FunFam G2/mitotic-specific cyclin-1 285 421 - -
Trre16g02585 436 Pfam Cyclin, N-terminal domain 182 307 IPR006671 -
Trre16g02585 436 SMART Cyclin_C_2 309 426 IPR004367 -
Trre16g02585 436 PIRSF Cyclin_A_B_D_E 2 436 IPR046965 GO:0016538|GO:0044772
Trre16g02585 436 SMART cyclin_7 216 300 IPR013763 -
Trre16g02585 436 SMART cyclin_7 313 395 IPR013763 -
Trre16g02585 436 Gene3D - 195 307 - -
Trre16g02585 436 Gene3D - 181 421 - -
Trre16g02585 436 CDD CYCLIN_AtCycB-like_rpt1 158 304 - -
Trre16g02585 436 PANTHER CYCLINS 130 411 IPR039361 -
Trre16g02585 436 CDD CYCLIN_AtCycB-like_rpt2 309 425 - -
Trre16g02585 436 ProSitePatterns Cyclins signature. 211 242 IPR006671 -
Trre16g02585 436 SUPERFAMILY Cyclin-like 309 423 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02585 Trre-Chr16 21534690 21538505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02585 2 430 Core Cell Cycle Gene Families AT1G20610 54.147 3.99e-164 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02585 K21777 - gmx:100798068 588.571