Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02584 ATGGGAGGTGACGGCGTCGTTGAGGATTCTGCGTCGGAATCGAAGACCGAACTTGAAGCTGTTAACATCAACGTTCGATGCTCTAACGGTTCAAAGTATTCCGTTCGTGTTTCTCTCGATTCAACTGTTGGATCCTTCAAGGATCTCATTGCTCGTAACTGTGATATCCCCGCACAACAACAACGCCTCATTTACAAGGGTCGTATATTGAAGGACGATCAAACTCTTCAAAGCTATGGTTTGGAGGCAGATCATGCTGTCCATTTGGTTCGTAGCTTTGTACCTACCAATGCGAGTGGTGGGACCAATAGTAGTGGCACCAATACCACAACGAATGATGCTGCAGGTGCTGGAGCTAGAGCTAATGATGCTGGGGGTTTAGGAGGGCTTGGTTTTGGAGGAGCTTCACTGTTTCCTGGACTTGGTACTAATGGCACTGGGGGGAATGGCTTATTTGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAACCCCAATTTAATGAGAGAAATGATGAATTCACCTGCTATGCAGAATTTAGTAAGTAATCCTGAGATAGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTAATGGATCGTAACCCTGAGTTAGCACACATACTTAATGATCCAAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGAGAAATGATGAGAAATACAGACAGGGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGTTGAGGCGCATGTATGAAAACGTTCAAGAACCATTTTTAAATGCCACTACAATGGCCGGCAATACAGGAATTTCAGCCACTCGGGACCAATCAACTAATCCCTCAACCACTAGTTCTGAAACAACTGCTGGTTCTCCCATACCCAATGCTAACCCACTTCCTAATCCTTGGTCCTCTACAGGAACTGGAGTTCCGCAAACTAACACCAGAAGATCAACCACTGGTGGGGATGCTAGACAGCAAGCACCTACTGGCTTAGGAGGTCTTGGTTTGCCTGGCCTTGAAGGCATGCTGGGTGGCAGTGGTATGCCAGATCCTGCTTTATTGACCCAATTAATGCAAAATCCAGCCATCTCACAAATGATGCAAAGTATGCTTTCCAACCCGCAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACTGAGCAACGTGGCATGCCTGATTTAAATTCTCTTAGAGATGTGATGCAAAATCCAGAGTTTCTACGTTTGTTTTCATCACCTGAGACATTGCAGCAACTCATGTCTTTCCAACAAGCCCTTCTGTCTCAGCAACAATCAGCACGGGAATCGGGTCAAACTGGTGGAGGGACTGGTACAGGGACTGGACCATTTAACAACATGGGGTTGGAGATGTTATCCAGCATGTTTGGTGGACTTGGGGCTGGTAGCCTAGCTGCTCCAAATAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAGCTTACACAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATAAGGGCTCTCATTGCCACTTCAGGGAATGTTCATGCAGCAGTTGAACGTCTTTTGGGGAACTCTGGTCAGTAG 1620 0.4636 MGGDGVVEDSASESKTELEAVNINVRCSNGSKYSVRVSLDSTVGSFKDLIARNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFVPTNASGGTNSSGTNTTTNDAAGAGARANDAGGLGGLGFGGASLFPGLGTNGTGGNGLFGEGFPDLEQMQQPFISNPNLMREMMNSPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGISATRDQSTNPSTTSSETTAGSPIPNANPLPNPWSSTGTGVPQTNTRRSTTGGDARQQAPTGLGGLGLPGLEGMLGGSGMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLMSFQQALLSQQQSARESGQTGGGTGTGTGPFNNMGLEMLSSMFGGLGAGSLAAPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02584 539 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
Trre16g02584 539 MobiDBLite consensus disorder prediction 280 349 - -
Trre16g02584 539 Pfam UBA/TS-N domain 497 533 IPR015940 -
Trre16g02584 539 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Trre16g02584 539 MobiDBLite consensus disorder prediction 97 116 - -
Trre16g02584 539 CDD UBA_PLICs 497 535 - -
Trre16g02584 539 MobiDBLite consensus disorder prediction 440 466 - -
Trre16g02584 539 Pfam Ubiquitin family 23 92 IPR000626 GO:0005515
Trre16g02584 539 SMART CBM 397 432 IPR006636 -
Trre16g02584 539 SMART CBM 340 393 IPR006636 -
Trre16g02584 539 SMART CBM 145 186 IPR006636 -
Trre16g02584 539 SMART CBM 199 238 IPR006636 -
Trre16g02584 539 SMART ubq_7 21 92 IPR000626 GO:0005515
Trre16g02584 539 PANTHER UBIQUILIN 17 534 IPR015496 -
Trre16g02584 539 MobiDBLite consensus disorder prediction 280 338 - -
Trre16g02584 539 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 491 536 IPR015940 -
Trre16g02584 539 MobiDBLite consensus disorder prediction 97 117 - -
Trre16g02584 539 FunFam Ubiquitin domain-containing protein DSK2b 480 538 - -
Trre16g02584 539 SUPERFAMILY Ubiquitin-like 15 108 IPR029071 -
Trre16g02584 539 SUPERFAMILY UBA-like 493 535 IPR009060 GO:0005515
Trre16g02584 539 Gene3D - 8 106 - -
Trre16g02584 539 Gene3D - 193 252 - -
Trre16g02584 539 CDD Ubl_Dsk2p_like 21 93 - -
Trre16g02584 539 Gene3D - 479 539 - -
Trre16g02584 539 SMART uba_6 497 535 IPR015940 -
Trre16g02584 539 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02584 Trre-Chr16 21471583 21476202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02584 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 3.21e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02584 K04523 - gmx:100776447 759.599