Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02582 ATGCTACAATCTAATGACCCCCAGAGTGATGGTGCCACAGATATTGGTCCTACTAGTGGAGAGGGTGCAAGTACAAGGAATATTAAAATGTTGCATGTGAGTTATTCAGATTTGGATTCTGGATGTTTGGCCCCCCTTAAGAAAGAAATTGGAACTATTATCAACAATCAGAAAATAAAATGCTGTGAAGATGAAGAAGCTGCTGCATCCAAATTGAAGGACGTTGTTGAATGTGTGAAAATCAACGTTCGTTACTTCAACGGTTCAAAATTTTCCGTTCAAGCTGCACTCGAATCCACAGTTGAATCCTTTAAGGAGCTTATCGTTGGAAACAGTGGCATTCCCATTCAAAATCAGCGACTCTTTTACAAAGGCAAAATCTTGCAGAATGATCAATCCCTTCAAAGCTATGGTTTGGGGGCAAATCATACTGTCCATCTGGTTCGTTGCTTTGCACCCACCGATACTGATGATGGGACCGGCAATAGTGACACCGGTACCATGACATATGATGTTGCTGATACTGAGTGGGATGATGAATTACTTCGAGAAGAGCTGCCACCACATCTCGTTAATCCTGACATAATGGGGGTTATATTAACGAACAACGAAGAACTACCACCAAACGGGGTTATTGATCCCAACATTGTGAGCCGGGTTCTTGAAGCTGCAAGGAACCCTGCGATCATGCACGAAATGACGAGACTATCCGACCTCGAACTGAACAACATTGTATGTTCTCCCGATGGATTCAACATGTTGAGGCACATTTATGAACAAATTCAAGAACCAAATGCCAGTATAGTGGCTGGTAATGGTATTACAGGAATTTCCGGGACTTATGACGGCAATGCCAGTTCTTCCTTACCCAATACTACCCCACTTCCCAATCCTTGGGCATTTACAGAACCAAATGCCAGTATAGTGGCTGGTAATGGTATTACAGGAATTTCCGGGACTTATGATGGCAATGCAAGTTCTTCCTTACCCAATACTACCCCACTTCCCAATCCTTGGGCTCCACTTCCCAATCCTTGGGCATCACTTCCCAATCTTTGGGCTCCAATTCCCAATCTTTGGGGTTTTATTGAAAATGACTGGGATTATATCGGAAGATCAACCACTGATTTTTCGGGCGTTGAAGGCATGTTGGATGGCAGTTTTATGCCAAATGATGCTTTGCAAGATCCACCTACGCCAGAATTCATAGAATTTATACCTTCCAACGGAGAAGCTTTGTGCCAGTTTGATGGTCGTAATATTGAACAACATGGCATGCCTGATTTAAGTTCCCTCAGAGAAGAGATTCAAAATCCGGAGTATCTTAGTTTGTCTTTTCAACCTGAGACATTGCAGCAACCATTGTCTTTCTTGGAAGAAGATCTTCCACCTGAGCTTAGTCAGCAACAATCAGTGCAGGAACCGGATCAGACAACTGGAGACACTGTGACAGCAGAGCAATTGTATGCCTGCCAACTTTCACACCTTCAACAGATGGGATTCAATGATAGAGAAGAAAACATAAGAGCTCTTATTCTCACTTCAGGGGATATTCTTGCAGCAATTCGACATCTTTGGTGGCTCTTACATCAGTAG 1596 0.4311 MLQSNDPQSDGATDIGPTSGEGASTRNIKMLHVSYSDLDSGCLAPLKKEIGTIINNQKIKCCEDEEAAASKLKDVVECVKINVRYFNGSKFSVQAALESTVESFKELIVGNSGIPIQNQRLFYKGKILQNDQSLQSYGLGANHTVHLVRCFAPTDTDDGTGNSDTGTMTYDVADTEWDDELLREELPPHLVNPDIMGVILTNNEELPPNGVIDPNIVSRVLEAARNPAIMHEMTRLSDLELNNIVCSPDGFNMLRHIYEQIQEPNASIVAGNGITGISGTYDGNASSSLPNTTPLPNPWAFTEPNASIVAGNGITGISGTYDGNASSSLPNTTPLPNPWAPLPNPWASLPNLWAPIPNLWGFIENDWDYIGRSTTDFSGVEGMLDGSFMPNDALQDPPTPEFIEFIPSNGEALCQFDGRNIEQHGMPDLSSLREEIQNPEYLSLSFQPETLQQPLSFLEEDLPPELSQQQSVQEPDQTTGDTVTAEQLYACQLSHLQQMGFNDREENIRALILTSGDILAAIRHLWWLLHQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02582 531 Gene3D - 67 161 - -
Trre16g02582 531 Gene3D - 468 527 - -
Trre16g02582 531 SMART ubq_7 79 150 IPR000626 GO:0005515
Trre16g02582 531 PANTHER UBIQUILIN 73 525 IPR015496 -
Trre16g02582 531 SUPERFAMILY UBA-like 485 526 IPR009060 GO:0005515
Trre16g02582 531 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 483 525 IPR015940 -
Trre16g02582 531 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g02582 531 Pfam Ubiquitin family 81 148 IPR000626 GO:0005515
Trre16g02582 531 SUPERFAMILY Ubiquitin-like 78 164 IPR029071 -
Trre16g02582 531 ProSiteProfiles Ubiquitin domain profile. 79 148 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02582 Trre-Chr16 21457310 21466962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02582 79 148 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 4.33e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02582 K04523 - gmx:100797539 266.159