Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02581 ATGGAAAACAATAAAAATGATTCCTCTAAATCTATGCTACAATCTAATGACCCCCAGAGTGATGGTGCCACAGATATTGGTCCTACTAGTGGAGAGGGTGCAAGTACAAGGAATATTAAAATGTTGCATGTGAGTTATTCAGATTTGGATTCTGGATGTTTGGCCCCCCTTAAGAAAGAAATTGGAACTATTATCAACAATCAGAAAATAAAATGCTGTGAAGATGAAGAAGCTGCTGCATCCAAATTGAAGGACGTTGTTGAATGTGTGAAAATCAACGTTCGTTACTTCAACGGTTCAAAATTTTCCGTTCAAGCTGCACTCGAATCCACAGTTGAATCCTTTAAGGAGCTTATCGTTGGAAACAGTGGCATTCCCATTCAAAATCAGCGACTCTTTTACAAAGGCAAAATCTTGCAGAATGATCAATCCCTTCAAAGCTATGGTTTGGGGGCAAATCATACTGTCCATCTGGTTCGTTGCTTTGCACCCACCGATACTGATGATGGGACCGGCAATAGTGACACCGGTACCATGACATATGATGTTGCTGATACTGAGTGGGATGATGAATTACTTCGAGAAGAGCTGCCACCACATCTCGTTAATCCTGACATAATGGGGGTTATATTAACGAACAACGAAGAACTACCACCAAACGGGGTTATTGATCCCAACATTGTGAGCCGGGTTCTTGAAGCTGCAAGGAACCCTGCGATCATGCACGAAATGACGAGACTATCCGACCTCGAACTGAACAACATTGTATGTTCTCCCGATGGATTCAACATGTTGAGGCACATTTATGAACAAATTCAAGAACCAAATGCCAGTATAGTGGCTGGTAATGGTATTACAGGAATTTCCGGGACTTATGACGGCAATGCCAGTTCTTCCTTACCCAATACTACCCCACTTCCCAATCCTTGGGCATTTACAGAACCAAATGCCAGTATAGTGGCTGGTAATGGTATTACAGGAATTTCCGGGACTTATGATGGCAATGCAAGTTCTTCCTTACCCAATACTACCCCACTTCCCAATCCTTGGGCTCCACTTCCCAATCCTTGGGCATCACTTCCCAATCTTTGGGCTCCAATTCCCAATCTTTGGGGTTTTATTGAAAATGACTGGGATTATATCGGAAGATCAACCACTGATTTTTCGGGCGTTGAAGGCATGTTGGATGGCAGTTTTATGCCAAATGATGCTTTGCAAGATCCACCTACGCCAGAATTCATAGAATTTATACCTTCCAACGGAGAAGCTTTGTGCCAGTTTGATGGTCGTAATATTGAACAACATGGCATGCCTGATTTAAGTTCCCTCAGAGAAGAGATTCAAAATCCGGAGTATCTTAGTTTGTCTTTTCAACCTGAGACATTGCAGCAACCATTGTCTTTCTTGGAAGAAGATCTTCCACCTGAGCTTAGTCAGCAACAATCAGTGCAGGAACCGGATCAGACAACTGGAGACACTGTGACAGCAGAGCAATTGTATGCCTGCCAACTTTCACACCTTCAACAGATGGGATTCAATGATAGAGAAGAAAACATAAGAGCTCTTATTCTCACTTCAGGGGATATTCTTGCAGCAATTCGACATCTTTGGTGGCTCTTACATCAGTAG 1629 0.4273 MENNKNDSSKSMLQSNDPQSDGATDIGPTSGEGASTRNIKMLHVSYSDLDSGCLAPLKKEIGTIINNQKIKCCEDEEAAASKLKDVVECVKINVRYFNGSKFSVQAALESTVESFKELIVGNSGIPIQNQRLFYKGKILQNDQSLQSYGLGANHTVHLVRCFAPTDTDDGTGNSDTGTMTYDVADTEWDDELLREELPPHLVNPDIMGVILTNNEELPPNGVIDPNIVSRVLEAARNPAIMHEMTRLSDLELNNIVCSPDGFNMLRHIYEQIQEPNASIVAGNGITGISGTYDGNASSSLPNTTPLPNPWAFTEPNASIVAGNGITGISGTYDGNASSSLPNTTPLPNPWAPLPNPWASLPNLWAPIPNLWGFIENDWDYIGRSTTDFSGVEGMLDGSFMPNDALQDPPTPEFIEFIPSNGEALCQFDGRNIEQHGMPDLSSLREEIQNPEYLSLSFQPETLQQPLSFLEEDLPPELSQQQSVQEPDQTTGDTVTAEQLYACQLSHLQQMGFNDREENIRALILTSGDILAAIRHLWWLLHQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02581 542 Gene3D - 479 538 - -
Trre16g02581 542 SUPERFAMILY Ubiquitin-like 89 175 IPR029071 -
Trre16g02581 542 PANTHER UBIQUILIN 84 536 IPR015496 -
Trre16g02581 542 SUPERFAMILY UBA-like 496 537 IPR009060 GO:0005515
Trre16g02581 542 Gene3D - 78 172 - -
Trre16g02581 542 ProSiteProfiles Ubiquitin domain profile. 90 159 IPR000626 GO:0005515
Trre16g02581 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 536 IPR015940 -
Trre16g02581 542 SMART ubq_7 90 161 IPR000626 GO:0005515
Trre16g02581 542 Pfam Ubiquitin family 92 159 IPR000626 GO:0005515
Trre16g02581 542 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02581 Trre-Chr16 21457310 21466995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02581 90 159 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 4.44e-06 44.7