Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02577 ATGGGTCTCTGTTTTTCCTTTCTCTTTCCTCCTTCTGCACCTCCCCAATCCTCTTCTTCCTTCAACAAACCACCACTTTCTTCAGGTTCAACAAGCACTATTGAATTCTCTGCAACAACAAGCAGTGCAGGAATAAGCCAATTTTCTGAGGTAGCAAGTGGAAGCATCGATAGCACTACTGAAGGGTCTCTTCGTTTTCCTTCACCAAATGGTGAAATTCTTGAAAGACCAAATTTGAAGGTTTTTAGTTTTGGTGATATGAAATCTGCAACAAGAGGCTTCAAATCTGATACATTGCTTGGTGAAGGTGGTTTTGGAAAAGTTTATAAAGGTTGGTTAGATGAGAAAACTCTTAATCCTGCTAAAGCTGGTTCTGGAGTCATGGTTGCCATTAAAAAATTGAACTCTGAAAGTACTCAAGGTTTTCAAGAATGGCAGTCAGAAGTCAATTTCTTAGGAAGACTTTCTCACCCAAACTTGGTGAAGCTATTGGGTTATTGTTGGGAAGATGAAGAGCTTCTTCTTGTGTATGAGTTCATGCCAAAAGGAAGTCAATTTTTGGTCAATTTATTACTTGGCTAG 582 0.3918 MGLCFSFLFPPSAPPQSSSSFNKPPLSSGSTSTIEFSATTSSAGISQFSEVASGSIDSTTEGSLRFPSPNGEILERPNLKVFSFGDMKSATRGFKSDTLLGEGGFGKVYKGWLDEKTLNPAKAGSGVMVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWEDEELLLVYEFMPKGSQFLVNLLLG 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02577 193 ProSiteProfiles Protein kinase domain profile. 94 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02577 193 PANTHER OS01G0588500 PROTEIN-RELATED 38 187 - -
Trre16g02577 193 Gene3D Phosphorylase Kinase; domain 1 78 179 - -
Trre16g02577 193 FunFam Serine/threonine-protein kinase BIK1 61 179 - -
Trre16g02577 193 ProSitePatterns Protein kinases ATP-binding region signature. 100 133 IPR017441 GO:0005524
Trre16g02577 193 MobiDBLite consensus disorder prediction 12 33 - -
Trre16g02577 193 Pfam Protein tyrosine and serine/threonine kinase 97 184 IPR001245 GO:0004672|GO:0006468
Trre16g02577 193 SUPERFAMILY Protein kinase-like (PK-like) 71 184 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02577 Trre-Chr16 21395439 21400122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02577 11 184 Receptor kinase-like Gene Family AT3G59740 36.207 1.20e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g02577 PK_Tyr_Ser-Thr 1.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02577 - - gmx:100794193 270.781