Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02576 ATGGGTCTCTGTTTTTCCTTTCTCTTTCCTCCTTCTGCACCTCCCCAATCATCTTCTTCCTTCAACAAACCACCACTTTCTTCAGATTCAACAAGCACTATTGAATTCTCTGCAACAACAAGCAGTGCAGGAAGAAGCCAATTTTCTGAGGTAGCAAGTGGAAGCATCGATAGCACTACTGAAGGGTCTCTTCGTTTTCCTTCACCAAATGGTCAAATTCTTGAAAGACCAAATTTGAAGGTTTTTAGTTTTGGTGATATGAAATCTGCAACAAGAGGCTTCAAATCTGATACATTGCTTGGTGAAGGTGGTTTTGGAAAAGTTTATAAAGGTTGGTTAGATGAGAAAACTCTTAATCCTGCTAAAGCTGGTTCTGGAGTCATGGTTGCCATTAAAAAATTGAACTCTGAAAGTACTCAAGGTTTTCAAGAATGGCAGTCAGAAGTCAATTTCTTAGGAAGACTTTCTCACCCAAACTTGGTGAAGCTATTGGGTTATTGTTGGGAAGATGAAGAGCTTCTTCTTGTGTATGAGTTCATGCCAAAAGGAAGTCAATTTTTGGTCAATTTATTACTTGGCTAG 582 0.39 MGLCFSFLFPPSAPPQSSSSFNKPPLSSDSTSTIEFSATTSSAGRSQFSEVASGSIDSTTEGSLRFPSPNGQILERPNLKVFSFGDMKSATRGFKSDTLLGEGGFGKVYKGWLDEKTLNPAKAGSGVMVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWEDEELLLVYEFMPKGSQFLVNLLLG 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02576 193 FunFam Serine/threonine-protein kinase BIK1 61 179 - -
Trre16g02576 193 MobiDBLite consensus disorder prediction 10 69 - -
Trre16g02576 193 ProSiteProfiles Protein kinase domain profile. 94 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02576 193 MobiDBLite consensus disorder prediction 11 67 - -
Trre16g02576 193 Pfam Protein tyrosine and serine/threonine kinase 97 184 IPR001245 GO:0004672|GO:0006468
Trre16g02576 193 PANTHER OS01G0588500 PROTEIN-RELATED 37 187 - -
Trre16g02576 193 SUPERFAMILY Protein kinase-like (PK-like) 70 184 IPR011009 -
Trre16g02576 193 ProSitePatterns Protein kinases ATP-binding region signature. 100 133 IPR017441 GO:0005524
Trre16g02576 193 Gene3D Phosphorylase Kinase; domain 1 78 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02576 Trre-Chr16 21387649 21392330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02576 82 184 Receptor kinase-like Gene Family AT4G29050 48.544 2.38e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g02576 PK_Tyr_Ser-Thr 1.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02576 - - gmx:100794193 271.166