Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02572 ATGACTAGAGGAAAGGTGAAACTTTCTTTCATTGTTGATGATGATGTGAGGAAAGCAACATATAAGAAAAGGAAGAACAATCTATTGAAGAAGGTTGATGAACTAAGCACCCTTTGTGGAATTGAAGCATGTGCTATAGTTTATAGCCCTTATGAGCTAGAACCTGAGATTTGGCCAACACCGCAGGGAGTCCAAAGCGTGCTCTCAAAATTCAAGGCAATGCCTGAATTTGAGAAGAACAAAAAAATGGTTAATCAACAGGCTTTCATGAAACAAAGGATAATGAAGGCCGAGGAACAACTAAAGAGATTGAGGAAAAACAACAGAGAGATAGAGATGAAAAATCTCATGTCTCAATGTATTAAAGAAGGCAAGGTTGTGCATAATAATATGTCAATGCATGATTTGAATACCTTTAATTGGTTTATTGACCAAAATTTGAAGGACATCAGTAGAAGATTGGAAGCAGAGGATACTAATGGTCAACGTCAAGCACATATCATAGCTAATCAAAGGCAAGTCCAACTCCAAATGACACTTGTGCCACCGCCACCGGCAATAACATCAAACAATGAAGAAATGCCAATGGTGATTGGTGATGGCCATGTTGAGATGGTCATAAACAATGATGACATCATGCAAGAGAAGTTATTTATGGACTTGATGATTAATGATCTACAAATTTTGAGCAGTAGTCAGAGATGGAGCATGGTTGAAGTTGTAGGGGAAAAGAGATGTAGAGAGAGGTCTCTTCAGTATGGTTGA 765 0.3817 MTRGKVKLSFIVDDDVRKATYKKRKNNLLKKVDELSTLCGIEACAIVYSPYELEPEIWPTPQGVQSVLSKFKAMPEFEKNKKMVNQQAFMKQRIMKAEEQLKRLRKNNREIEMKNLMSQCIKEGKVVHNNMSMHDLNTFNWFIDQNLKDISRRLEAEDTNGQRQAHIIANQRQVQLQMTLVPPPPAITSNNEEMPMVIGDGHVEMVINNDDIMQEKLFMDLMINDLQILSSSQRWSMVEVVGEKRCRERSLQYG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02572 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g02572 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g02572 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g02572 254 Coils Coil 80 114 - -
Trre16g02572 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Trre16g02572 254 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Trre16g02572 254 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Trre16g02572 254 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre16g02572 254 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Trre16g02572 254 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre16g02572 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Trre16g02572 254 Coils Coil 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02572 Trre-Chr16 21351227 21354991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02572 1 155 Type I MADS-box Gene Family AT5G48670 54.839 4.07e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g02572 SRF-TF 4.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02572 - - gmx:100813231 226.868