Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02560 ATGTCTTGTTCTTCTTCATCTGGGTCTGAAGATGACGATGAGGGCTTCGATTCTTACCGGAAAGGTGGCTACCACGCCGTTAGAGTCGGTGATCAGTTCGCCGGAGGAAGGTACATAGCTCAGAGGAAATTGGGTTGGGGTCAATTTTCAACCGTTTGGCTTGCTTATGATACTACAACTTCTGCATATGTTGCTCTCAAGATCCAGAAAAGTGCGGCACAATTTGTTCAGGCTGCCCTTCATGAGATAGATGTTCTTTCTTCCATTGCCGATGGCACCCCGTCAAATTTAAAATTTGTTGTTCAATTGATTGACCAATTTAAGCACACAGGCCCTAATGGCCAGCACCAGTGCATGGTACTCGAGTTTCTTGGAGACAGCTTGCTTCGCCTAATCAAATACAATCGTTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGTCAATGCATTTTGATCGGTTTGGATTACTTGCATAGAGAACACGGTATTATCCACACAGACCTAAAACTGGAAAATGTTCTTCTGGTTTCGACCATTGATCCTGCCAAAGACCCTGTTAGGTCAGGAGTATCCCCGATTTTAGAGAGGCCGGAGGGAAACATAAACAGCACGGTTACTAGTCTTATCGAGAAAAAGTTGAAAAGGAGAGCGAGGAGGGCAGTAGCTAAAATATCTGGACAAAGAGCTTCAATGGGAGGAATGGGAGAAGTGGCAGAAGCTCCGAAATCTGAGAGAAATATTGGTGGGATTGATGTGAGATGCAAAGTGGTAGACTTTGGAAATGCGTGTTGGGCTGATAAGCCATTTGCTGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTTATACTGCAGGCTGGTTATTCCTTTTCTGTCGACATGTGGTCTTTTGCTTGTATCGCTTTCGAGCTTGCCACTGGTGATATGTTGTTTACTCCTAAGGTCGGACAAGGTTTTAGCGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCGCGGAAGGTTGCTACTGCAGGAGCGAAATCCAAGGATTTCTTCGATAGACACGGAGATCTCAAAAGGATCCGAAGGCTAAAATATTGGCCACTTAACAAACTATTGATTGAAAGATACAAATTTTCAGAGAGCGATGCTAATGAATTTTCGGAGTTTCTTACACCTCTTCTTGATTTCGCGCCCGAGAAACGACCGACTGCTCAGCAATGTCTGCAACACCCTTGGCTCGCGGGAAAGGAGTCCATTCCTAATGACATGAGAACTGAATCTAGTGTTGAAAAAGTGGATGTTGGAATAAGCAACCTTAAAATCAAGGTGGGGAAGTGA 1347 0.4439 MSCSSSSGSEDDDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSAYVALKIQKSAAQFVQAALHEIDVLSSIADGTPSNLKFVVQLIDQFKHTGPNGQHQCMVLEFLGDSLLRLIKYNRYKGLPLNKVREICQCILIGLDYLHREHGIIHTDLKLENVLLVSTIDPAKDPVRSGVSPILERPEGNINSTVTSLIEKKLKRRARRAVAKISGQRASMGGMGEVAEAPKSERNIGGIDVRCKVVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATAGAKSKDFFDRHGDLKRIRRLKYWPLNKLLIERYKFSESDANEFSEFLTPLLDFAPEKRPTAQQCLQHPWLAGKESIPNDMRTESSVEKVDVGISNLKIKVGK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02560 448 SMART serkin_6 38 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02560 448 CDD STKc_SRPK 27 416 - -
Trre16g02560 448 Gene3D Transferase(Phosphotransferase) domain 1 92 416 - -
Trre16g02560 448 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 244 421 - -
Trre16g02560 448 SUPERFAMILY Protein kinase-like (PK-like) 32 420 IPR011009 -
Trre16g02560 448 FunFam Serine/threonine-protein kinase SRPK 115 416 - -
Trre16g02560 448 Pfam Protein kinase domain 256 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02560 448 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02560 448 FunFam Protein kinase superfamily protein 24 123 - -
Trre16g02560 448 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Trre16g02560 448 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Trre16g02560 448 ProSiteProfiles Protein kinase domain profile. 38 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02560 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02560 Trre-Chr16 21256887 21260967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02560 4 431 EF-hand Containing Proteins AT5G22840 50.210 2.58e-166 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trre16g02560 Pkinase 2.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02560 K08832 - gmx:100814976 771.541