Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02557 ATGATTAGAGTTTGGATTGTGCTGTTGATGGTTCTCTCTAATTTGTTCTCTTCAACTGTGGTTGGCTTGGATAATTCCACTGTACCTCCAGTTGTAAATATTGGGGTTCTCTACTCTTTCAATACTAGTGTTGGCAGAATAGTGAAAATTGCGGTAGAAACTGCGGTTAACGATATAAACTCTGATTCTTCTATTCTTGGTGACACTAAGTTGAAGCTCTCACTGCAAGAAGATTCCAAATATAGAGGCTTTTTGAGCATTGCTGAGGCGTTGCAGCTCATGGCGACACACACTGTGGCCATTATCGGTCCACAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAACTCCAGGTTCCTCTGTTATCATTTTCAGCAACTGATCCTACTCTTTCTTCGCTTCAATTCCCGTTCTTCATTAGAACTTCCTTCAATGACATTTTTCAAATGACTGCAATAGCAGACATTGTAAGCCACTATGGTTGGAGAGAGGTTATCGCAGTCTATGGTGATGACGATCATGGGAGGAATGGAATTGGTGGGTTAGGCGATAAGCTTGCTGAGAGACGTTGCAAGATCTCGTTTAAAGCACCGATGCCTCCTGAGGCAACGAATGAGGAGATTACTGATGTGCTTGTTCAGGTGGCGTTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCAAAAGTGTTGAGCGTGGCAAAGTCGCTTGGAATGATGCAAAATGGTTATGTTTGGATTGCTACTACTTTTCTCACATCTTTTATTGACATCGATAGTCCTCTCTCTTCAGATGAAATGGATAACATGCAAGGAGTTATTGCACTAAGAATGTACATACCAGATTCAAAGCTCAAAAGATCATTCGTTTCTAGGTGGACGAATTTGACTAGTGGAAAGGAGGGAAGCGGTCCTCTTGGTTTGAGTACTTATGGTATCTTTGCTTATGATACTGTTTACGTTCTTGCTCGTGCCCTTGATACATTTTTCAAACAAGGGAACCGAATTACATTTTCACACGATCCAAAGATATCAGAAATAAGTGGAGACAGCTTGCATCTTGATGCTGTGAAAATCTTCAATGAAGGAAATCAGTTGCGCAAAAGTATTTACGAGGTTAACATGACTGGTGTAACAGGTCCATTCAGGTATACATCTGATGGAAACCTTGCTAATCCAGCATATGAGATCATTAATGTGATCGGAACAGGGACCCGCAGGATCGGTTATTGGTCTAATTACTCTGGATTATTGATTGTTCCTCCAGAAACACTTTATTCAAAACCACCTAATCGTTCCATTGAAAACCAAAAGCTACTCACTGTGTTTTGGCCGGGTGAAACAACCCAATTACCTCGAGGTTGGGTTTTTCCAAACAATGGAAAGATGTTAAAAATCGGAGTACCGAAAAGGGTTAGTTACCGCGAATTTGTTTCTCAGGTACAATCCACTGACACGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTAAACTTGTTGCCCTATGCTGTCCCCTATAAGTTTGTTCCATATGGTGATGGTCAAAGCAATCCTAGTAACACCGAGCTTGTGCGCCTGATCACTGCCGGGGTCTTTGATGCTGCAGTAGGTGACATTACAATTACAACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATAGAGTCTGGTCTAGTGGTCGTAGCATCGGTTAAGAAGACGGATTCCAATGCTTGGGCATTTTTGACACCATTTACACCAATGATGTGGACTGTAACAGCTATCTTTTTCCTACTAGTGGGAGCTGTTGTTTGGATTCTAGAGCATAGACTGAATGATGATTTTAGGGGACCTCCTAAAAAACAAGTAGCCACAATTTTGTGGTTTAGTTTTTCAACTATGTTCTTCGCTCACAGGGAAAATACTGTGAGCACTCTAGGTCGTTTTGTGCTACTTATATGGCTATTTGTAGTACTAATAATCAACTCGAGTTATACGGCAAGCCTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCTATAAAAGGAATTGAAAGTTTAGTAAATAGCAAAGAACCCATTGGTTACTTGCAGGGTTCTTTTGCCCGATCTTATTTAATCGACGAAATCGGTATTCATGAATCCAGACTAGTTCCTCTAAAAACACCTGAAGAAACTATGAAAGCACTGGAGAAAGGTCCCCAAAAGGGTGGTGTTGCTGCATACATTAACGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTTTCTATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTTGCCTTTCCACCAGACTCACCATTAGCGGTTGACCTGTCAACTGCCATTTTAGAGTTAGCAGAAAATGGAGATTTACAAAGAATCCATGACAAATGGCTTTTGAGCAGTGCTTGTCGATCACAAGGTGCAAAGCTTGAAGTGGATAAACTCAATCTCAAAAGCTTTTGGGGCCTCTATCTAGTCTGCGGTTTGGCATGTGCACTTGCTCTCCTAATATATCTTATTCAGACCTTGAGGCAGTACAAGAAACACAGTCCAGAGGAACTCGAGTCTTCTGGCCATGGTTCGGGATCTTCGCGTCTGCGAACTTTCCTTTCATTTGTAGATGAAAAAGAAGATATAGCTAAGAGCCGCTCCAAGAGAAGGCAAATGGAGAGGATTTCATATAGAAGCACAAGTGAGGTTGGATCCAACATCAACTCCAATAAAGATTTGTCTCAGTCAGCGACATCATTAAACAGAATTGATGCTACTAATGAAGTCTGA 2823 0.4152 MIRVWIVLLMVLSNLFSSTVVGLDNSTVPPVVNIGVLYSFNTSVGRIVKIAVETAVNDINSDSSILGDTKLKLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSFNDIFQMTAIADIVSHYGWREVIAVYGDDDHGRNGIGGLGDKLAERRCKISFKAPMPPEATNEEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMQNGYVWIATTFLTSFIDIDSPLSSDEMDNMQGVIALRMYIPDSKLKRSFVSRWTNLTSGKEGSGPLGLSTYGIFAYDTVYVLARALDTFFKQGNRITFSHDPKISEISGDSLHLDAVKIFNEGNQLRKSIYEVNMTGVTGPFRYTSDGNLANPAYEIINVIGTGTRRIGYWSNYSGLLIVPPETLYSKPPNRSIENQKLLTVFWPGETTQLPRGWVFPNNGKMLKIGVPKRVSYREFVSQVQSTDTFKGFCIDVFLSAVNLLPYAVPYKFVPYGDGQSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGPPKKQVATILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNSKEPIGYLQGSFARSYLIDEIGIHESRLVPLKTPEETMKALEKGPQKGGVAAYINERAYIELFLSSRCDFSIVGQEFTRNGWGFAFPPDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACRSQGAKLEVDKLNLKSFWGLYLVCGLACALALLIYLIQTLRQYKKHSPEELESSGHGSGSSRLRTFLSFVDEKEDIAKSRSKRRQMERISYRSTSEVGSNINSNKDLSQSATSLNRIDATNEV 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02557 940 CDD GluR_Plant 470 812 - -
Trre16g02557 940 Gene3D - 782 812 - -
Trre16g02557 940 Gene3D - 730 781 - -
Trre16g02557 940 FunFam Glutamate receptor 583 713 - -
Trre16g02557 940 PIRSF IGluLR_plant 1 940 IPR017103 -
Trre16g02557 940 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Trre16g02557 940 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Trre16g02557 940 Gene3D - 50 400 - -
Trre16g02557 940 Gene3D - 148 425 - -
Trre16g02557 940 Gene3D - 471 582 - -
Trre16g02557 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 891 IPR015683 -
Trre16g02557 940 MobiDBLite consensus disorder prediction 908 926 - -
Trre16g02557 940 FunFam Glutamate receptor 467 583 - -
Trre16g02557 940 CDD PBP1_GABAb_receptor_plant 33 425 IPR044440 -
Trre16g02557 940 FunFam Glutamate receptor 709 816 - -
Trre16g02557 940 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Trre16g02557 940 Gene3D - 583 709 - -
Trre16g02557 940 FunFam Glutamate receptor 148 301 - -
Trre16g02557 940 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Trre16g02557 940 MobiDBLite consensus disorder prediction 895 926 - -
Trre16g02557 940 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Trre16g02557 940 Pfam Bacterial extracellular solute-binding proteins, family 3 492 812 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02557 Trre-Chr16 21233305 21237381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02557 5 914 Ion Channels AT3G51480 59.693 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02557 K05387 - gmx:100788917 1563.51