Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02556 ATGAAACATCTTTTCTTTCTCTTCATCTTCCTCCTCTCGCTTCTCAATCAACAACGCTGCTGCATCGTCAACGCTCTTTCTCGCTCACCTACATCACGTTCCATTCTCTCTCTTCCTCCTCCCAAGGCAGCAACTACAGCACTGTTTGCCGCACTAGATGGGACCATGTATTTGGTGGCCAGCCAGGAGAACGGTTCCATGAGGGTAATATGGTCATTCTCCACAGGATCACCGATCTATAGTTCGTATCAAGCTCCTATCAATAAGGACCGTGGTAAAAAAAATACATCTTCAGCACCAACCAGTGGGTTCGTGGAGTGTGGGGATGATTGGTCTTTGTACATGCACGACAAGATCCTCGGTAAAATGAGATTGTCAGAATCTATTGCAGAATTTGTACTTCGTGCACCTATCATTTCAGATGACGGAACTGCTATATTTGGATACAAAGAAGACAGTCTGTTCGAAGTTGACGCTAAAACTGGGTTGATCATTCAAATTCACGCCAAATCTGATCCTGGTAATGCTTCTGCACCTTTGAGAGATGACAGGCTGAGCGCTAAAAATATCATTAGTGCAGATAATAAGGATCTTGCTGATCCTGAGAAGCTAAATTCATCACAGCCGCTGCTCATGCTTTTTAGGAAAGATTATACTCTGAAGTCCGTTAACACCAGCTCAAAAATAGTCTTGTGGAATTTGACAGTAACTGAATTTGAAGCTGTATTATTATGCCAACATACTACAGTTGATGTAGAGGATGAAATTCCTTCTGACAGTGGCTTCAATTTTGCGATGCCTTACCCATGTCAAGAGATGCAAAACGTCTTTCGCTTGAAAAAGAGTTTTCTGTTAAAATCTTTAATAACTGAAAGTTTAATTGGGCCTTTTCATGAAAATGATATACTCTCAACGACTGCCTCACATTGGGTGATTCCATTGCAACCCAGTGTTGATAGATTTTTTGATGGTCATGATGGTAATATCACATTTCTTCCTACGCCTTTGCCATATTCTATGCCCTATCTGCAACAAAATAATGTTCAGGCACATAAACTCCCTCCGCCTCTCATTGAGATTACTTCACCAAGTGATGTTTATTTGAACAAGAGTGGATGGTCAACTCCATTACCTCGTATATTGTTTAGGGTCTTTCTTCTGGTGTTAGGCTTTTCACTCATCTGCTTTCTTCTGGTGAAGGTGATTAAGAATCAAGATACACCAAAGGACCAAAACAGAGAGTATGAATTGAAAAGTTCACCTGCTAAGAGAAATAAAACGCACAAGTCAGGAAAGAACGGTGACACTATTGATAAAATGGAAAACCATCTTTCTTCAGAAGATGAAGATGCACTGACACGAAAAGATACTAATAGAGAAGAATGGCAGAACTTTAATCAAGTTGACGAAGGTTTTGATGGACGGAAAATTGGTAAATTATTCGTTTCAAATGAAGAGATTGCTAAGGGAAGCAATGGTACAATTGTCCTAGGCGGAAGATATGAAAGTCGACCAGTTGCAGTTAAGCGTCTTGTCAAAGCTCATCACAAGGTAGCCTATAAAGAAATCCGAAACCTCATTGTGTCTGACCGTCATCCAAACATTGTCCGATGGCATGGGGTGGAGTATGATCAAGATTTTATTTACCTAGCACTGGAACGTTGTACTTGCAACTTGGATGATTTGATAAAGGGCCAAATGGAGACAGGGAAGGATAGTACACAGTATCTTTGGAAAGAAAATGGCTATCCATCAGCTCTATTGCTGAAGTTGATGAGGTTGATATTATTTCTTCTCGATTTACTGGTTATTAAAAGACACATTCAGCCAAAAGATAATACCAATAGACATAGAATAATACATCGAGATTTGAAACCCCAAAATGTTCTAATAAACAACGAAAGATCCTTATGTGCAAAACTTTCTGACATCGGCATTAGCAAACTTCTTCTTGAAAATATGTCCTCTTTGGGTCATAATGCTACTGGTGGGGGCAGTTCAGGTTGGCAAGCCCCAGAGCAGCTTGATCAAGGGCGCCAAACACGAGCTGTTGATATGTTCAGTTTAGGTTGCATTCTTTTTTTCTGTATGACTCAGGGACGACATCCATTTGGACAACATCTTGAACGTGATATCAATATTGTGAAAAATAAAAAAAATCTTTGCTTAGTGCATTTCATTCCGGAAGCTGAGGATCTTATTAGCTGTTTATTAAACCCTGACCCTGACCTAAGGCTGAAAGCAATTGAAGTATTGCACCATCCTTTTTTCTGGAGTTCCGAGACGAGACTTTCATTTTTACGCGACACTAGTGATAGGGTGGAACTGGAAGATAAAAATATTAATTCTAGTCTTTTGAGGGCGTTAGAAAGCATTGCCACAACAGCCTTAGGTGGTAAATGGGATGAAAAGATGGAACCGGCTTTCATTACTAACATTAGTCGTTACCGGCGTTATAAGTTTAACAGTGTTCGAGACTTGTTGCGGGTTATGAGAAACAAGCTAAATCATTATGGAGAATTGCCTCAAGAAATCCAGGAACTAGTTGGACCTGTTCCTGAAGGATTCAATGACTACTTTGCAAACCGATTCCCAAGACTCTTGATTGAAGTTTATAATGTTATATGCAAGCATTGCAAGGAGGAAGAGTGTTTTCAAAGGTATTTTAAAAATGACGATTTCCTTTGTATGGCCTGA 2697 0.399 MKHLFFLFIFLLSLLNQQRCCIVNALSRSPTSRSILSLPPPKAATTALFAALDGTMYLVASQENGSMRVIWSFSTGSPIYSSYQAPINKDRGKKNTSSAPTSGFVECGDDWSLYMHDKILGKMRLSESIAEFVLRAPIISDDGTAIFGYKEDSLFEVDAKTGLIIQIHAKSDPGNASAPLRDDRLSAKNIISADNKDLADPEKLNSSQPLLMLFRKDYTLKSVNTSSKIVLWNLTVTEFEAVLLCQHTTVDVEDEIPSDSGFNFAMPYPCQEMQNVFRLKKSFLLKSLITESLIGPFHENDILSTTASHWVIPLQPSVDRFFDGHDGNITFLPTPLPYSMPYLQQNNVQAHKLPPPLIEITSPSDVYLNKSGWSTPLPRILFRVFLLVLGFSLICFLLVKVIKNQDTPKDQNREYELKSSPAKRNKTHKSGKNGDTIDKMENHLSSEDEDALTRKDTNREEWQNFNQVDEGFDGRKIGKLFVSNEEIAKGSNGTIVLGGRYESRPVAVKRLVKAHHKVAYKEIRNLIVSDRHPNIVRWHGVEYDQDFIYLALERCTCNLDDLIKGQMETGKDSTQYLWKENGYPSALLLKLMRLILFLLDLLVIKRHIQPKDNTNRHRIIHRDLKPQNVLINNERSLCAKLSDIGISKLLLENMSSLGHNATGGGSSGWQAPEQLDQGRQTRAVDMFSLGCILFFCMTQGRHPFGQHLERDINIVKNKKNLCLVHFIPEAEDLISCLLNPDPDLRLKAIEVLHHPFFWSSETRLSFLRDTSDRVELEDKNINSSLLRALESIATTALGGKWDEKMEPAFITNISRYRRYKFNSVRDLLRVMRNKLNHYGELPQEIQELVGPVPEGFNDYFANRFPRLLIEVYNVICKHCKEEECFQRYFKNDDFLCMA 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02556 898 Pfam Protein kinase domain 617 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02556 898 Pfam Ribonuclease 2-5A 763 889 IPR010513 GO:0004540|GO:0006397
Trre16g02556 898 SUPERFAMILY Protein kinase-like (PK-like) 463 760 IPR011009 -
Trre16g02556 898 SMART PGNneu 822 876 - -
Trre16g02556 898 ProSiteProfiles KEN domain profile. 760 891 IPR010513 GO:0004540|GO:0006397
Trre16g02556 898 ProSiteProfiles Protein kinase domain profile. 481 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02556 898 SMART serkin_6 481 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02556 898 Gene3D Transferase(Phosphotransferase) domain 1 557 759 - -
Trre16g02556 898 MobiDBLite consensus disorder prediction 409 453 - -
Trre16g02556 898 CDD RNase_Ire1 761 889 - -
Trre16g02556 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Trre16g02556 898 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 761 893 - -
Trre16g02556 898 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 473 553 - -
Trre16g02556 898 Gene3D Phosphorylase Kinase; domain 1 468 553 - -
Trre16g02556 898 Gene3D KEN domain 760 896 IPR038357 -
Trre16g02556 898 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 570 759 - -
Trre16g02556 898 PANTHER IRE1-RELATED 123 892 IPR045133 GO:0004521|GO:0004674|GO:0030968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02556 Trre-Chr16 21224441 21232512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02556 507 756 MAP Kinase Kinase Kinase AT3G06030 26.378 3.18e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre16g02556 Pkinase 2.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02556 K08852 - gmx:100788389 1111.67