Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02555 ATGAAACATCTTTTCTTTCTCTTCATCTTCCTCCTCTCGCTTCTCAATCAACAACGCTGCTGCATCGTCAACGCTCTTTCTCGCTCACCTACATCACGTTCCATTCTCTCTCTTCCTCCTCCCAAGGCAGCAACTACAGCACTGTTTGCCGCACTAGATGGGACCATGTATTTGGTGGCCAGCCAGGAGAACGGTTCCATGAGGGTAATATGGTCATTCTCCACAGGATCACCGATCTATAGTTCGTATCAAGCTCCTATCAATAAGGACCGTGGTAAAAAAAATACATCTTCAGCACCAACCAGTGGGTTCGTGGAGTGTGGGGATGATTGGTCTTTGTACATGCACGACAAGATCCTCGGTAAAATGAGATTGTCAGAATCTATTGCAGAATTTGTACTTCGTGCACCTATCATTTCAGATGACGGAACTGCTATATTTGGATACAAAGAAGACAGTCTGTTCGAAGTTGACGCTAAAACTGGGTTGATCATTCAAATTCACGCCAAATCTGATCCTGGTAATGCTTCTGCACCTTTGAGAGATGACAGGCTGAGCGCTAAAAATATCATTAGTGCAGATAATAAGGATCTTGCTGATCCTGAGAAGCTAAATTCATCACAGCCGCTGCTCATGCTTTTTAGGAAAGATTATACTCTGAAGTCCGTTAACACCAGCTCAAAAATAGTCTTGTGGAATTTGACAGTAACTGAATTTGAAGCTGTATTATTATGCCAACATACTACAGTTGATGTAGAGGATGAAATTCCTTCTGACAGTGGCTTCAATTTTGCGATGCCTTACCCATGTCAAGAGATGCAAAACGTCTTTCGCTTGAAAAAGAGTTTTCTGTTAAAATCTTTAATAACTGAAAGTTTAATTGGGCCTTTTCATGAAAATGATATACTCTCAACGACTGCCTCACATTGGGTGATTCCATTGCAACCCAGTGTTGATAGATTTTTTGATGGTCATGATGGTAATATCACATTTCTTCCTACGCCTTTGCCATATTCTATGCCCTATCTGCAACAAAATAATGTTCAGGCACATAAACTCCCTCCGCCTCTCATTGAGATTACTTCACCAAGTGATGTTTATTTGAACAAGAGTGGATGGTCAACTCCATTACCTCGTATATTGTTTAGGGTCTTTCTTCTGGTGTTAGGCTTTTCACTCATCTGCTTTCTTCTGGTGAAGGTGATTAAGAATCAAGATACACCAAAGGACCAAAACAGAGAGTATGAATTGAAAAGTTCACCTGCTAAGAGAAATAAAACGCACAAGTCAGGAAAGAACGGTGACACTATTGATAAAATGGAAAACCATCTTTCTTCAGAAGATGAAGATGCACTGACACGAAAAGATACTAATAGAGAAGAATGGCAGAACTTTAATCAAGTTGACGAAGGTTTTGATGGACGGAAAATTGGTAAATTATTCGTTTCAAATGAAGAGATTGCTAAGGGAAGCAATGGTACAATTGTCCTAGGCGGAAGATATGAAAGTCGACCAGTTGCAGTTAAGCGTCTTGTCAAAGCTCATCACAAGGTAGCCTATAAAGAAATCCGAAACCTCATTGTGTCTGACCGTCATCCAAACATTGTCCGATGGCATGGGGTGGAGTATGATCAAGATTTTATTTACCTAGCACTGGAACGTTGTACTTGCAACTTGGATGATTTGATAAAGGGCCAAATGGAGACAGGGAAGGATAGTACACAGTATCTTTGGAAAGAAAATGGCTATCCATCAGCTCTATTGCTGAAGTTGATGAGGTTGATATTATTTCTTCTCGATTTACTGGTTATTAAAAGACACATTCAGCCAAAAGATAATACCAATAGACATAGGATATTGTTTCCGGGGTTGTTGCATGATCTAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTCTAATAAACAACGAAAGATCCTTATGTGCAAAACTTTCTGACATCGGCATTAGCAAACTTCTTCTTGAAAATATGTCCTCTTTGGGTCATAATGCTACTGGTGGGGGCAGTTCAGGTTGGCAAGCCCCAGAGCAGCTTGATCAAGGGCGCCAAACACGAGCTGTTGATATGTTCAGTTTAGGTTGCATTCTTTTTTTCTGTATGACTCAGGGACGACATCCATTTGGACAACATCTTGAACGTGATATCAATATTGTGAAAAATAAAAAAAATCTTTGCTTAGTGCATTTCATTCCGGAAGCTGAGGATCTTATTAGCTGTTTATTAAACCCTGACCCTGACCTAAGGCTGAAAGCAATTGAAGTATTGCACCATCCTTTTTTCTGGAGTTCCGAGACGAGACTTTCATTTTTACGCGACACTAGTGATAGGGTGGAACTGGAAGATAAAAATATTAATTCTAGTCTTTTGAGGGCGTTAGAAAGCATTGCCACAACAGCCTTAGGTGGTAAATGGGATGAAAAGATGGAACCGGCTTTCATTACTAACATTAGTCGTTACCGGCGTTATAAGTTTAACAGTGTTCGAGACTTGTTGCGGGTTATGAGAAACAAGCTAAATCATTATGGAGAATTGCCTCAAGAAATCCAGGAACTAGTTGGACCTGTTCCTGAAGGATTCAATGACTACTTTGCAAACCGATTCCCAAGACTCTTGATTGAAGTTTATAATGTTATATGCAAGCATTGCAAGGAGGAAGAGTGTTTTCAAAGGTATTTTAAAAATGACGATTTCCTTTGTATGGCCTGA 2730 0.3996 MKHLFFLFIFLLSLLNQQRCCIVNALSRSPTSRSILSLPPPKAATTALFAALDGTMYLVASQENGSMRVIWSFSTGSPIYSSYQAPINKDRGKKNTSSAPTSGFVECGDDWSLYMHDKILGKMRLSESIAEFVLRAPIISDDGTAIFGYKEDSLFEVDAKTGLIIQIHAKSDPGNASAPLRDDRLSAKNIISADNKDLADPEKLNSSQPLLMLFRKDYTLKSVNTSSKIVLWNLTVTEFEAVLLCQHTTVDVEDEIPSDSGFNFAMPYPCQEMQNVFRLKKSFLLKSLITESLIGPFHENDILSTTASHWVIPLQPSVDRFFDGHDGNITFLPTPLPYSMPYLQQNNVQAHKLPPPLIEITSPSDVYLNKSGWSTPLPRILFRVFLLVLGFSLICFLLVKVIKNQDTPKDQNREYELKSSPAKRNKTHKSGKNGDTIDKMENHLSSEDEDALTRKDTNREEWQNFNQVDEGFDGRKIGKLFVSNEEIAKGSNGTIVLGGRYESRPVAVKRLVKAHHKVAYKEIRNLIVSDRHPNIVRWHGVEYDQDFIYLALERCTCNLDDLIKGQMETGKDSTQYLWKENGYPSALLLKLMRLILFLLDLLVIKRHIQPKDNTNRHRILFPGLLHDLGIIHRDLKPQNVLINNERSLCAKLSDIGISKLLLENMSSLGHNATGGGSSGWQAPEQLDQGRQTRAVDMFSLGCILFFCMTQGRHPFGQHLERDINIVKNKKNLCLVHFIPEAEDLISCLLNPDPDLRLKAIEVLHHPFFWSSETRLSFLRDTSDRVELEDKNINSSLLRALESIATTALGGKWDEKMEPAFITNISRYRRYKFNSVRDLLRVMRNKLNHYGELPQEIQELVGPVPEGFNDYFANRFPRLLIEVYNVICKHCKEEECFQRYFKNDDFLCMA 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02555 909 ProSiteProfiles KEN domain profile. 771 902 IPR010513 GO:0004540|GO:0006397
Trre16g02555 909 Gene3D Transferase(Phosphotransferase) domain 1 623 770 - -
Trre16g02555 909 Gene3D KEN domain 771 907 IPR038357 -
Trre16g02555 909 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 473 553 - -
Trre16g02555 909 MobiDBLite consensus disorder prediction 409 453 - -
Trre16g02555 909 Pfam Ribonuclease 2-5A 774 900 IPR010513 GO:0004540|GO:0006397
Trre16g02555 909 Pfam Protein kinase domain 625 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02555 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Trre16g02555 909 SMART serkin_6 481 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02555 909 PANTHER IRE1-RELATED 123 903 IPR045133 GO:0004521|GO:0004674|GO:0030968
Trre16g02555 909 Gene3D Phosphorylase Kinase; domain 1 468 553 - -
Trre16g02555 909 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 619 770 - -
Trre16g02555 909 SMART PGNneu 833 887 - -
Trre16g02555 909 CDD RNase_Ire1 772 900 - -
Trre16g02555 909 SUPERFAMILY Protein kinase-like (PK-like) 475 782 IPR011009 -
Trre16g02555 909 ProSiteProfiles Protein kinase domain profile. 481 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02555 909 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 772 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02555 Trre-Chr16 21224441 21232512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02555 507 767 MAP Kinase Kinase Kinase AT3G06030 26.038 1.56e-18 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre16g02555 Pkinase 6.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02555 K08852 - gmx:100788389 1117.83