Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02545 ATGACTCGCACACTTAGAACATTACAATCTATTTCCTCCGCCGCACCACCGCCGGAATCCGCCGCTTCATTAGAATCCGACTTTGTTGTCATCCTAGCCGCTCTCCTCTGTGCTCTTATTTCCGTCGTGGGTCTAACCGCCATCGCACGTTGTGCATGGCTCCGCCGTGGTCCGGTCGCCGGAGCTTCGCCGGCGACGGCGGTCGTCAACAAAGGTCTTAAAAAGAAGGTTCTCAATTCACTTCCAAAATTCACTTACAGTGACGGAAGTCCCGGAAAATGGGTAGTCTCGTCTGAGTGCGCCATTTGTCTCTCGGAGTTCACCGCCGGCGAAGAGGTCCGGGTACTTCCTCAGTGTGGTCATGGATTCCACGTGGCATGTGTTGACACGTGGCTTGGTTCTCACTCTTCTTGTCCTTCTTGCCGTGCTCCTTTTGCCGTCGCTAGGTGCCAGAAATGTGGCCTTTATCAGCCTACGCCGGCCGGAGATGTCGCCGGTGAAACGGAGGCAAAGTCCGGCGGCGGAGAGAATGGTGAAGTTGTTGTTAATGTTAATTGTAATGGTGAGAGTGTTGATAGGCATAGCCACGGTGTTTATAATAATGGCTTCTTGCCTTAA 618 0.5291 MTRTLRTLQSISSAAPPPESAASLESDFVVILAALLCALISVVGLTAIARCAWLRRGPVAGASPATAVVNKGLKKKVLNSLPKFTYSDGSPGKWVVSSECAICLSEFTAGEEVRVLPQCGHGFHVACVDTWLGSHSSCPSCRAPFAVARCQKCGLYQPTPAGDVAGETEAKSGGGENGEVVVNVNCNGESVDRHSHGVYNNGFLP 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02545 205 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g02545 205 FunFam E3 ubiquitin-protein ligase ATL6 62 148 - -
Trre16g02545 205 SMART ring_2 100 141 IPR001841 -
Trre16g02545 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Trre16g02545 205 Pfam Ring finger domain 99 142 IPR001841 -
Trre16g02545 205 CDD RING-H2_EL5-like 99 142 - -
Trre16g02545 205 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Trre16g02545 205 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 154 - -
Trre16g02545 205 SUPERFAMILY RING/U-box 78 147 - -
Trre16g02545 205 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02545 Trre-Chr16 21121404 21122021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02545 1 153 C3H Transcription Factor Family AT1G20823 60.241 1.69e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02545 - - vun:114170353 245.743