Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02542 ATGCCTATTGAGATAATTGATCTTACAAACACCCCTGACTCCCCTCCATCAGCACCCATATCTTCATCCAATGCACCAATGATCCTTAACTTTGGTCCTGTTTCTACCAATCCTAATCTTCACCAACATATCCATCACCACCAACACCAAACTACTTTGTTGGTACCAGTAGCTCCAACACACACCAATGAGACTCCTCAAATCGCTACCGGTTGGCCCCAACCCGGCGTTTTTCACAGCCGAGTTACAACGGTTCTCAAACCGTTACCTGAACCAAACACATTGCAATTGTCAAATGGAGTCAGGCCCGGGGTTCGTTGGAGTCAATTAGAGCATGACTTATTTCTGATGGGATTGATTGAGTATGGAAAAGGGAGATGGAGCAAAATAGCAAAGCATTATGTATGCAACAAGACACCCCAACAAGTTCAAAACTATGCTGCAAGCTTCTTCAAGCATCTTCCACCAGCTTATGTGCATGGTTTTAAGAGAAGAAAACAAATATCAAATCCCAATAACTCTTTTTCAAACAGAAACAAGAATTCATCATATTATTCAATGCCTAATATGATTCCTAACAATGATCCTACAAAGGAAACTCTCATTCCTTATCATAAGGTTGGAAAATATTATGGAGGAGAAGCTAGCAGCAGCAACAATTATAGGATGGTTGAGATGATGAATGATGGTGCAAGTACTTCCATGACTCTTCCTAATGCTGCTTCTACTAATGGAAAAATTGATTTGGAGCTTCGTTTGGCTTTATAA 768 0.4049 MPIEIIDLTNTPDSPPSAPISSSNAPMILNFGPVSTNPNLHQHIHHHQHQTTLLVPVAPTHTNETPQIATGWPQPGVFHSRVTTVLKPLPEPNTLQLSNGVRPGVRWSQLEHDLFLMGLIEYGKGRWSKIAKHYVCNKTPQQVQNYAASFFKHLPPAYVHGFKRRKQISNPNNSFSNRNKNSSYYSMPNMIPNNDPTKETLIPYHKVGKYYGGEASSSNNYRMVEMMNDGASTSMTLPNAASTNGKIDLELRLAL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02542 255 SUPERFAMILY Homeodomain-like 107 154 IPR009057 -
Trre16g02542 255 ProSiteProfiles Myb-like domain profile. 106 151 IPR001005 -
Trre16g02542 255 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g02542 255 Pfam Myb-like DNA-binding domain 106 146 IPR001005 -
Trre16g02542 255 ProSiteProfiles SANT domain profile. 106 155 IPR017884 -
Trre16g02542 255 Gene3D - 105 155 - -
Trre16g02542 255 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 101 215 IPR043363 -
Trre16g02542 255 SMART sant 103 153 IPR001005 -
Trre16g02542 255 CDD SANT 106 147 IPR001005 -
Trre16g02542 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 155 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02542 Trre-Chr16 21093165 21094751 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g02542 Myb_DNA-binding 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02542 - - tpra:123922869 394.815