Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02526 ATGAACCTTCCTACTGATTCAGAACAACCACCACCAGATTCCGCCACCGTCAACGGCACATCTACATCGGAGCAAAATCCAGAACCACCTTCATCTTCATCAGAACTCCAACTCCCAATATCTTGGCCACAAGACGGAAAACTAACCATAGAATGGATCCAAAATCTAACACTCTGTTTCGATTGGTCTTCCAAAAACCTACCTCCTTCCGAATTCCCTTCCGTTCTTCCTGTTCATGTCTTCGATTCACTCATTCTCATCGCTTCAAAGATGCTTCATAAGGAACCTAATTGCGTTCCTATACAACCTTTTCGTCATGATCCTGATTCTTCTTCTTCTTCTTCCTCCGCTGCATCTGTTGTTGTTGTTGGTGATGTTCATGGACAATTGCATGATCTCCTTTTCCTTCTTCGAGATGCTGGTTATCCTTCAAAAGATCGAATCTTTGTTTTCAATGGTGATTATGTTGATCGTGGAGCTTGGGGACTCGAAACTTTCTTGCTCTTGTTGGCTTGGAAGGTATTCATGCCAGAAAACATATATTTATTGAGAGGGAATCATGAATCGAAATATTGCACTTCTGTTTATGGTTTTGAAAAAGAAGTTATGGTAAAGTATAGTGACAAAGGCAAACACGTATACCGGAAATGTTTAGGATGCTTTGAAGGTCTACCTTTGGCTTCTATTATAGCAGGGTGCGTATACACAGCTCACGGAGGACTTTTCCGTAGTGTAACTGTGACACCTTCAAAGAGATTAAAAGGAAAGAAGAATCGTAAGATTAATGTTACTACCGATAGCAAAAATTTATTGCTTGGTTCCTTGGAAGAGTTGTCCAAGGCTCGACGTTCGGTGCTTGATCCTCCTTGGGAAGGACAAAACTTGATTCCTGGTGATGTTTTGTGGTCTGATCCTTCAAAAACGCCTGGTCTTTCTCCAAACAAAGAGAGAGGCATTGGCTTGATTTGGGGTCCTGATATTACTGAAGCATTTTTGAAGAAGTACCAATTTAAGTTGATCATCAGGTCACATGAAGGTCCTGATGCCAGGGAGAAAAGGGATGGTTTTGAGGGAATGGGTGAAGGTTACACTATTGATCATATTGTGGAATCTGGAAAGCTGATCACCGTGTTTAGTGCTCCAGATTACCCACAATTTCAGGCAACGGAGGAGAGGTATAACAACAAAGGTGCATATGTTGTCCTTGAGCCCCCGAATTTCGACAATCCTATATTTCATGGATTTTCGGCTGTTACTCCAAGGCCAAAGGCAAATCCTTACTATGATTTTGAAGAAGTGTTAGACTCCGACGAAGAATTGGACTTAGCCTCCATGGTAACTACCTGA 1347 0.4187 MNLPTDSEQPPPDSATVNGTSTSEQNPEPPSSSSELQLPISWPQDGKLTIEWIQNLTLCFDWSSKNLPPSEFPSVLPVHVFDSLILIASKMLHKEPNCVPIQPFRHDPDSSSSSSSAASVVVVGDVHGQLHDLLFLLRDAGYPSKDRIFVFNGDYVDRGAWGLETFLLLLAWKVFMPENIYLLRGNHESKYCTSVYGFEKEVMVKYSDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSVTVTPSKRLKGKKNRKINVTTDSKNLLLGSLEELSKARRSVLDPPWEGQNLIPGDVLWSDPSKTPGLSPNKERGIGLIWGPDITEAFLKKYQFKLIIRSHEGPDAREKRDGFEGMGEGYTIDHIVESGKLITVFSAPDYPQFQATEERYNNKGAYVVLEPPNFDNPIFHGFSAVTPRPKANPYYDFEEVLDSDEELDLASMVTT 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02526 448 PRINTS Serine/threonine phosphatase family signature 149 176 IPR006186 GO:0016787
Trre16g02526 448 PRINTS Serine/threonine phosphatase family signature 182 206 IPR006186 GO:0016787
Trre16g02526 448 PRINTS Serine/threonine phosphatase family signature 279 306 IPR006186 GO:0016787
Trre16g02526 448 PRINTS Serine/threonine phosphatase family signature 219 245 IPR006186 GO:0016787
Trre16g02526 448 PRINTS Serine/threonine phosphatase family signature 119 146 IPR006186 GO:0016787
Trre16g02526 448 PRINTS Serine/threonine phosphatase family signature 373 389 IPR006186 GO:0016787
Trre16g02526 448 FunFam Serine/threonine-protein phosphatase 60 443 - -
Trre16g02526 448 ProSitePatterns Serine/threonine specific protein phosphatases signature. 183 188 IPR006186 GO:0016787
Trre16g02526 448 Gene3D - 73 440 IPR029052 -
Trre16g02526 448 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 18 444 - -
Trre16g02526 448 MobiDBLite consensus disorder prediction 1 39 - -
Trre16g02526 448 Pfam Calcineurin-like phosphoesterase 119 347 IPR004843 GO:0016787
Trre16g02526 448 SMART pp2a_7 76 422 IPR006186 GO:0016787
Trre16g02526 448 SUPERFAMILY Metallo-dependent phosphatases 73 420 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02526 Trre-Chr16 20917097 20922523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02526 39 339 Calmodulin-binding Proteins AT5G63870 68.212 2.69e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02526 K04460 - gmx:100802851 750.74