Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02520 ATGATCATTGATATGCCACCATCCATGGCTGAAAATCCTAGGACAACAAGCAGATCTTTCTTTAGTTCTAGCAATGGCAATGAGAGTATCCCTGTGAACAATGCTGATGATTATGATAGTGATAGCTCAAATTTGGCACCACGCACACCATCAACTCTGTCTATGGCTGTTCCAGCTGAACTTGCTGGAGCTATACCCTTGATCGACAAATTTCAGGTGGATGGATTTTTAAAACTGATGCATAAACAAATTCAATCTTCTGGAAAACGTGGATTTTTTTCTAAAAGATCTTCAGATCCCCAAGCTCGTGAAAAATTTACATTTGAAGACATGCTGTCTTTTCAAAAGGATCCAATACCAACTGCATTGTTGAAGATTAATGGTGATTTAGTAAGTCGGGCGACAAAATTATTCCAGATAATTTTGAAGTATACTGGAGTTGATTCATCTGATTGTGCAACTCCATTAAGCTTAGATGAACGAGTTGAGCTTGTTGGGAAACTATACAAGCAAAGTTTGAAACGTGCAGAACTTCGAGACGAGCTTTTTGTTCAGATATCAAAACAAACAAGAAATAACCCTGACAGGCAATACTTGATCAAAGCATGGGAGCTTATGTATGTATGTGCATCCTCCATGTCTCCTAGTAAAGACATTGCGGCTTATCTGTCAGAATACATTCAGAACATAGCACATGGAGTAGCAACTGATTCTGAGATCCAAACCCTTGCACTAAATACGTTGAATGCTTTGAAGCGTTCTGTTAAGGCTGGTCCTCGACATATAATACCTGGGCGAGAGGAGATTGAAGCTTTGTTGACTGGGAGAAAGCTTACAAATATAGTGTTTTTCTTAGATGAAACGTTTGAAGAAATTACGTATGACATGTCAACAACAGTAGCCGACGCTGTTGAGGAACTTGCAGGGCTCATTAAACTCTCGACTTACTCTAGCTTTAGTTTGTTTGAATATCGTAAAGTTGTTACAAGTTCCAAATCACCTGATCCTGGTAATGAGGAGTACATTGGGTTAGATGATAACAAATATATTTTGCAACATGATTATATTTTGGGTAATTACCCTGTTGGAAAAGACGATGCTGCTCAGCTTTCTGCATTACAAATCTTGGCTGAGATTGGATTTGTTAGCACACCCGAAACATGCACTAACTGGAATTCACTTCTGGAGCGATTCCTTCCTAGACAAATTTCAATGACACGAGCAAAACGTGAATGGGAGTTTGATATTATATCTCGATATCATTCATTGGAGCATCTGACAAAAGATGATGCAAGACAACAATTTCTGCGTATACTGAGAGCACTTCCTTATGGGAATTCTGTTTTCTTCAACGTTCGCAAAATTGATGATCCTATTGGCATCTTGCCTGGACGAATAATAATTGGAATCAATAAAAGAGGGATTCATTTTTTCCGTCCAGTTCCTAAGGAATATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTCGGAAGCAGCAACACTGCAGTCTTTTTTAAAATGCGAGTAGCAGGTGTTCTTCACATATTCCAATTTGAAACCAAGCAGGGGGAAGAAATTTGCGTAGCTCTTCAGACACATATAAATGATGTAATGCTGCGCCGCTATTCGAAAGCACGTTCTTCTAGTGGCGGTAGTTCTTTGAATGGCGATGTTTCAAATAATTCAAAGCCTCCTAATTTAGAATCATATGAGAAACGCATTCAAGATTTATCAAAACTTGTTGAAGAATCTCAAAGAAATGCTGATCAATTGAATAAAGAATTGCATGAGAAGCAAGAACAGGAAGAAAAAATGCAAGAACAATTGGAGGGTTTGAAGGAATCCTTAAAAGCCAACGAGCAAAATCTTAAGGCAGTTACAAGTGACTGCGAAAGGCTTAGGTCATTATGCAATAAAAAAGATCAGGCGCTGCAGGTTATAGAGAACCATTCCAAAAAGGATCTTGTTGAAACAAATAACCAAGTGCTACAAAAGCTTAAATATGAGCTAAAAAATTGTAAAGATGAACTGCTTTCAGCCGAACTGACTATCAAAACCTTGACAAGTGAAAAAATGATTTTGGAACAGAAGCTATCTGTGCTTGAGAAGAGGATCGCCGAAGAGAGTAGTTCTCTTCAACGGAAATTTGAGCAAGAGCGCAAAGCTGTGAAGTCTGAAGTGTACGACCTTGAAAGAAAGCTAGAAGGGTATAGACAAGAATTAATGACTGCTAAGTCTATTATTTCAGTCAAGGACACCGAGTTGGCTGCATTGCAAAATAATTTCAAGGAATTGGATGAATTACGAGAAATGAAAGAGGACATTGATAGAAAGAATGAACAGACAGCTGCCATATTGAAGATGCAAGGGGCTCAACTAGCCGAAATGGAAGCCCTTTATAAGGAAGAACAAGTTTTAAGGAAGCGTTATTTTAATGTAATAGAAGACATGAAAGGCAAGATTCGAGTTTATTGTCGGCTAAGACCTCTTAGTGAAAAAGAGATTGGTGAGAAAGAAAGAGAAGCTGTTACTGCAGTTGACGAGTTTACTGTTGAGTTTCTATGGAAAGATGATAAGCCGAAGCAGTACATATATGATCGTGTTTTTGGCAGTGATGCAACTCAAGAAAGTGTATTTGAGGATACCAGGTATTTGGTGCAATCTGCTGTAGATGGTTATAATGTGTGCATATTTGCTTATGGTCAAACTGGCTCTGGAAAGACGTTTACAATCTATGGTTCCGAAGATAATCCTGGGCTTACCCCTCGTGCAATTAGTGAACTTTTTAGAATTATACGGAGAGATAGTAACAAGTATTCCTTTTCCTTGAAGGCATACATGGTGGAATTATATCAAGATACTCTAATAGATCTTCTGTTACCTAGGAATGCAAAGCATTCAAGATTAGATATCAAGAAGGATTCAACGGGAATGGTTGTTGTGGAAAATGTGACGGTGATGTCAATTTCTACAATTGAAGAATTGAATAATATAATACAAAAGGGATCTGAACGTCGACATATATCAGGGACACAAATGAATGAAGAAAGTTCAAGATCTCATCTCATTCTTTCAATAGTAATTGAAAGCACCAACCTTCAAAGCCAATCAGTTGCAAGGGGAAAGCTGAGTTTTGTTGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTATGGGTAGTCAGCTGAAGGAAGCACAGAGTATCAACAAATCATTATCAGCACTTGGAGATGTTATAAGTTCTTTGTCTTCTGGCGGTCAACACACACCTTATAGGAATCACAAGCTAACAATGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTCAAAGTTTCTCCAATAGAATCAAGCTTGGATGAGACTCATAACTCTCTCATGTATGCTTCAAGAGTTAGATCAATTGTGAATGACCCTAACAAAAATGTTAGTTCAAAAGAAGTAGCGCGATTAAAGAAGTTGGTTGCATATTGGAAACAACAAGCTGGTAGAGGAATTGAGTATGAAGATTTAGAAGAAATTCAAGAAGAACGATCACCTAAAGATAGACCAGATAGTCATGGTAGCTCCAGATCTAGTCTAGGTGGTAAATAA 3615 0.3809 MIIDMPPSMAENPRTTSRSFFSSSNGNESIPVNNADDYDSDSSNLAPRTPSTLSMAVPAELAGAIPLIDKFQVDGFLKLMHKQIQSSGKRGFFSKRSSDPQAREKFTFEDMLSFQKDPIPTALLKINGDLVSRATKLFQIILKYTGVDSSDCATPLSLDERVELVGKLYKQSLKRAELRDELFVQISKQTRNNPDRQYLIKAWELMYVCASSMSPSKDIAAYLSEYIQNIAHGVATDSEIQTLALNTLNALKRSVKAGPRHIIPGREEIEALLTGRKLTNIVFFLDETFEEITYDMSTTVADAVEELAGLIKLSTYSSFSLFEYRKVVTSSKSPDPGNEEYIGLDDNKYILQHDYILGNYPVGKDDAAQLSALQILAEIGFVSTPETCTNWNSLLERFLPRQISMTRAKREWEFDIISRYHSLEHLTKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGILPGRIIIGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSSSGGSSLNGDVSNNSKPPNLESYEKRIQDLSKLVEESQRNADQLNKELHEKQEQEEKMQEQLEGLKESLKANEQNLKAVTSDCERLRSLCNKKDQALQVIENHSKKDLVETNNQVLQKLKYELKNCKDELLSAELTIKTLTSEKMILEQKLSVLEKRIAEESSSLQRKFEQERKAVKSEVYDLERKLEGYRQELMTAKSIISVKDTELAALQNNFKELDELREMKEDIDRKNEQTAAILKMQGAQLAEMEALYKEEQVLRKRYFNVIEDMKGKIRVYCRLRPLSEKEIGEKEREAVTAVDEFTVEFLWKDDKPKQYIYDRVFGSDATQESVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDNPGLTPRAISELFRIIRRDSNKYSFSLKAYMVELYQDTLIDLLLPRNAKHSRLDIKKDSTGMVVVENVTVMSISTIEELNNIIQKGSERRHISGTQMNEESSRSHLILSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSMGSQLKEAQSINKSLSALGDVISSLSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVKVSPIESSLDETHNSLMYASRVRSIVNDPNKNVSSKEVARLKKLVAYWKQQAGRGIEYEDLEEIQEERSPKDRPDSHGSSRSSLGGK 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02520 1204 Gene3D - 447 555 IPR011993 -
Trre16g02520 1204 ProSitePatterns Kinesin motor domain signature. 1042 1053 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre16g02520 1204 Pfam FERM central domain 352 449 IPR019748 -
Trre16g02520 1204 Coils Coil 756 786 - -
Trre16g02520 1204 MobiDBLite consensus disorder prediction 10 46 - -
Trre16g02520 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 1168 IPR027417 -
Trre16g02520 1204 SUPERFAMILY PH domain-like 449 537 - -
Trre16g02520 1204 Coils Coil 714 741 - -
Trre16g02520 1204 Gene3D - 349 442 IPR014352 -
Trre16g02520 1204 PANTHER KINESIN-LIKE PROTEIN KLP-3 553 1184 IPR027640 GO:0003777|GO:0007018
Trre16g02520 1204 MobiDBLite consensus disorder prediction 1175 1195 - -
Trre16g02520 1204 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 93 275 - -
Trre16g02520 1204 CDD FERM_C_KCBP 446 547 - -
Trre16g02520 1204 ProSiteProfiles Kinesin motor domain profile. 821 1142 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02520 1204 MobiDBLite consensus disorder prediction 1175 1204 - -
Trre16g02520 1204 SUPERFAMILY Second domain of FERM 352 444 IPR035963 -
Trre16g02520 1204 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 447 556 - -
Trre16g02520 1204 CDD KISc_C_terminal 819 1144 - -
Trre16g02520 1204 Gene3D - 1145 1193 - -
Trre16g02520 1204 Coils Coil 657 705 - -
Trre16g02520 1204 Gene3D Kinesin motor domain 764 1143 IPR036961 -
Trre16g02520 1204 FunFam Kinesin-like calmodulin-binding protein 765 1144 - -
Trre16g02520 1204 Coils Coil 568 637 - -
Trre16g02520 1204 ProSiteProfiles MyTH4 domain profile. 114 273 IPR000857 GO:0005856
Trre16g02520 1204 MobiDBLite consensus disorder prediction 1 46 - -
Trre16g02520 1204 PRINTS Kinesin heavy chain signature 1043 1061 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02520 1204 PRINTS Kinesin heavy chain signature 1092 1113 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02520 1204 PRINTS Kinesin heavy chain signature 893 914 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02520 1204 PRINTS Kinesin heavy chain signature 1012 1029 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02520 1204 MobiDBLite consensus disorder prediction 548 568 - -
Trre16g02520 1204 ProSiteProfiles FERM domain profile. 241 543 IPR000299 GO:0005856
Trre16g02520 1204 SMART MyTH4_1 114 273 IPR000857 GO:0005856
Trre16g02520 1204 SMART kinesin_4 819 1150 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02520 1204 Gene3D MyTH4 domain 92 275 IPR038185 -
Trre16g02520 1204 Pfam MyTH4 domain 167 271 IPR000857 GO:0005856
Trre16g02520 1204 SUPERFAMILY Prismane protein-like 764 825 IPR011254 GO:0003824|GO:0016491
Trre16g02520 1204 SMART B41_5 274 449 IPR019749 -
Trre16g02520 1204 CDD FERM_B-lobe 351 442 IPR019748 -
Trre16g02520 1204 Pfam Kinesin motor domain 827 1142 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02520 Trre-Chr16 20824027 20831440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02520 30 1193 Calmodulin-binding Proteins AT5G65930 67.524 0.0 1669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02520 - - gmx:100807481 1861.66