Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02519 ATGATCATTGATATGCCACCATCCATGGCTGAAAATCCTAGGACAACAAGCAGATCTTTCTTTAGTTCTAGCAATGGCAATGAGAGTATCCCTGTGAACAATGCTGATGATTATGATAGTGATAGCTCAAATTTGGCACCACGCACACCATCAACTCTGTCTATGGCTGTTCCAGCTGAACTTGCTGGAGCTATACCCTTGATCGACAAATTTCAGGTGGATGGATTTTTAAAACTGATGCATAAACAAATTCAATCTTCTGGAAAACGTGGATTTTTTTCTAAAAGATCTTCAGATCCCCAAGCTCGTGAAAAATTTACATTTGAAGACATGCTGTCTTTTCAAAAGGATCCAATACCAACTGCATTGTTGAAGATTAATGGTGATTTAGTAAGTCGGGCGACAAAATTATTCCAGATAATTTTGAAGTATACTGGAGTTGATTCATCTGATTGTGCAACTCCATTAAGCTTAGATGAACGAGTTGAGCTTGTTGGGAAACTATACAAGCAAAGTTTGAAACGTGCAGAACTTCGAGACGAGCTTTTTGTTCAGATATCAAAACAAACAAGAAATAACCCTGACAGGCAATACTTGATCAAAGCATGGGAGCTTATGTATGTATGTGCATCCTCCATGTCTCCTAGTAAAGACATTGCGGCTTATCTGTCAGAATACATTCAGAACATAGCACATGGAGTAGCAACTGATTCTGAGATCCAAACCCTTGCACTAAATACGTTGAATGCTTTGAAGCGTTCTGTTAAGGCTGGTCCTCGACATATAATACCTGGGCGAGAGGAGATTGAAGCTTTGTTGACTGGGAGAAAGCTTACAAATATAGTGTTTTTCTTAGATGAAACGTTTGAAGAAATTACGTATGACATGTCAACAACAGTAGCCGACGCTGTTGAGGAACTTGCAGGGCTCATTAAACTCTCGACTTACTCTAGCTTTAGTTTGTTTGAATATCGTAAAGTTGTTACAAGTTCCAAATCACCTGATCCTGGTAATGAGGAGTACATTGGGTTAGATGATAACAAATATATTGTGAGTGTACAATTGCAACATGATTATATTTTGGGTAATTACCCTGTTGGAAAAGACGATGCTGCTCAGCTTTCTGCATTACAAATCTTGGCTGAGATTGGATTTGTTAGCACACCCGAAACATGCACTAACTGGAATTCACTTCTGGAGCGATTCCTTCCTAGACAAATTTCAATGACACGAGCAAAACGTGAATGGGAGTTTGATATTATATCTCGATATCATTCATTGGAGCATCTGACAAAAGATGATGCAAGACAACAATTTCTGCGTATACTGAGAGCACTTCCTTATGGGAATTCTGTTTTCTTCAACGTTCGCAAAATTGATGATCCTATTGGCATCTTGCCTGGACGAATAATAATTGGAATCAATAAAAGAGGGATTCATTTTTTCCGTCCAGTTCCTAAGGAATATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTCGGAAGCAGCAACACTGCAGTCTTTTTTAAAATGCGAGTAGCAGGTGTTCTTCACATATTCCAATTTGAAACCAAGCAGGGGGAAGAAATTTGCGTAGCTCTTCAGACACATATAAATGATGTAATGCTGCGCCGCTATTCGAAAGCACGTTCTTCTAGTGGCGGTAGTTCTTTGAATGGCGATGTTTCAAATAATTCAAAGCCTCCTAATTTAGAATCATATGAGAAACGCATTCAAGATTTATCAAAACTTGTTGAAGAATCTCAAAGAAATGCTGATCAATTGAATAAAGAATTGCATGAGAAGCAAGAACAGGAAGAAAAAATGCAAGAACAATTGGAGGGTTTGAAGGAATCCTTAAAAGCCAACGAGCAAAATCTTAAGGCAGTTACAAGTGACTGCGAAAGGCTTAGGTCATTATGCAATAAAAAAGATCAGGCGCTGCAGGTTATAGAGAACCATTCCAAAAAGGATCTTGTTGAAACAAATAACCAAGTGCTACAAAAGCTTAAATATGAGCTAAAAAATTGTAAAGATGAACTGCTTTCAGCCGAACTGACTATCAAAACCTTGACAAGTGAAAAAATGATTTTGGAACAGAAGCTATCTGTGCTTGAGAAGAGGATCGCCGAAGAGAGTAGTTCTCTTCAACGGAAATTTGAGCAAGAGCGCAAAGCTGTGAAGTCTGAAGTGTACGACCTTGAAAGAAAGCTAGAAGGGTATAGACAAGAATTAATGACTGCTAAGTCTATTATTTCAGTCAAGGACACCGAGTTGGCTGCATTGCAAAATAATTTCAAGGAATTGGATGAATTACGAGAAATGAAAGAGGACATTGATAGAAAGAATGAACAGACAGCTGCCATATTGAAGATGCAAGGGGCTCAACTAGCCGAAATGGAAGCCCTTTATAAGGAAGAACAAGTTTTAAGGAAGCGTTATTTTAATGTAATAGAAGACATGAAAGGCAAGATTCGAGTTTATTGTCGGCTAAGACCTCTTAGTGAAAAAGAGATTGGTGAGAAAGAAAGAGAAGCTGTTACTGCAGTTGACGAGTTTACTGTTGAGTTTCTATGGAAAGATGATAAGCCGAAGCAGTACATATATGATCGTGTTTTTGGCAGTGATGCAACTCAAGAAAGTGTATTTGAGGATACCAGGTATTTGGTGCAATCTGCTGTAGATGGTTATAATGTGTGCATATTTGCTTATGGTCAAACTGGCTCTGGAAAGACGTTTACAATCTATGGTTCCGAAGATAATCCTGGGCTTACCCCTCGTGCAATTAGTGAACTTTTTAGAATTATACGGAGAGATAGTAACAAGTATTCCTTTTCCTTGAAGGCATACATGGTGGAATTATATCAAGATACTCTAATAGATCTTCTGTTACCTAGGAATGCAAAGCATTCAAGATTAGATATCAAGAAGGATTCAACGGGAATGGTTGTTGTGGAAAATGTGACGGTGATGTCAATTTCTACAATTGAAGAATTGAATAATATAATACAAAAGGGATCTGAACGTCGACATATATCAGGGACACAAATGAATGAAGAAAGTTCAAGATCTCATCTCATTCTTTCAATAGTAATTGAAAGCACCAACCTTCAAAGCCAATCAGTTGCAAGGGGAAAGCTGAGTTTTGTTGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTATGGGTAGTCAGCTGAAGGAAGCACAGAGTATCAACAAATCATTATCAGCACTTGGAGATGTTATAAGTTCTTTGTCTTCTGGCGGTCAACACACACCTTATAGGAATCACAAGCTAACAATGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTCAAAGTTTCTCCAATAGAATCAAGCTTGGATGAGACTCATAACTCTCTCATGTATGCTTCAAGAGTTAGATCAATTGTGAATGACCCTAACAAAAATGTTAGTTCAAAAGAAGTAGCGCGATTAAAGAAGTTGGTTGCATATTGGAAACAACAAGCTGGTAGAGGAATTGAGTATGAAGATTTAGAAGAAATTCAAGAAGAACGATCACCTAAAGATAGACCAGATAGTCATGGTAGCTCCAGATCTAGTCTAGGTGGTAAATAA 3627 0.381 MIIDMPPSMAENPRTTSRSFFSSSNGNESIPVNNADDYDSDSSNLAPRTPSTLSMAVPAELAGAIPLIDKFQVDGFLKLMHKQIQSSGKRGFFSKRSSDPQAREKFTFEDMLSFQKDPIPTALLKINGDLVSRATKLFQIILKYTGVDSSDCATPLSLDERVELVGKLYKQSLKRAELRDELFVQISKQTRNNPDRQYLIKAWELMYVCASSMSPSKDIAAYLSEYIQNIAHGVATDSEIQTLALNTLNALKRSVKAGPRHIIPGREEIEALLTGRKLTNIVFFLDETFEEITYDMSTTVADAVEELAGLIKLSTYSSFSLFEYRKVVTSSKSPDPGNEEYIGLDDNKYIVSVQLQHDYILGNYPVGKDDAAQLSALQILAEIGFVSTPETCTNWNSLLERFLPRQISMTRAKREWEFDIISRYHSLEHLTKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGILPGRIIIGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSSSGGSSLNGDVSNNSKPPNLESYEKRIQDLSKLVEESQRNADQLNKELHEKQEQEEKMQEQLEGLKESLKANEQNLKAVTSDCERLRSLCNKKDQALQVIENHSKKDLVETNNQVLQKLKYELKNCKDELLSAELTIKTLTSEKMILEQKLSVLEKRIAEESSSLQRKFEQERKAVKSEVYDLERKLEGYRQELMTAKSIISVKDTELAALQNNFKELDELREMKEDIDRKNEQTAAILKMQGAQLAEMEALYKEEQVLRKRYFNVIEDMKGKIRVYCRLRPLSEKEIGEKEREAVTAVDEFTVEFLWKDDKPKQYIYDRVFGSDATQESVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDNPGLTPRAISELFRIIRRDSNKYSFSLKAYMVELYQDTLIDLLLPRNAKHSRLDIKKDSTGMVVVENVTVMSISTIEELNNIIQKGSERRHISGTQMNEESSRSHLILSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSMGSQLKEAQSINKSLSALGDVISSLSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVKVSPIESSLDETHNSLMYASRVRSIVNDPNKNVSSKEVARLKKLVAYWKQQAGRGIEYEDLEEIQEERSPKDRPDSHGSSRSSLGGK 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02519 1208 CDD KISc_C_terminal 823 1148 - -
Trre16g02519 1208 Coils Coil 572 641 - -
Trre16g02519 1208 Coils Coil 661 709 - -
Trre16g02519 1208 SUPERFAMILY Prismane protein-like 768 829 IPR011254 GO:0003824|GO:0016491
Trre16g02519 1208 MobiDBLite consensus disorder prediction 10 46 - -
Trre16g02519 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 1172 IPR027417 -
Trre16g02519 1208 Gene3D - 1149 1197 - -
Trre16g02519 1208 Gene3D Kinesin motor domain 768 1147 IPR036961 -
Trre16g02519 1208 MobiDBLite consensus disorder prediction 552 572 - -
Trre16g02519 1208 SUPERFAMILY PH domain-like 453 541 - -
Trre16g02519 1208 ProSitePatterns Kinesin motor domain signature. 1046 1057 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre16g02519 1208 Gene3D - 348 446 IPR014352 -
Trre16g02519 1208 PRINTS Kinesin heavy chain signature 1096 1117 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02519 1208 PRINTS Kinesin heavy chain signature 1047 1065 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02519 1208 PRINTS Kinesin heavy chain signature 897 918 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02519 1208 PRINTS Kinesin heavy chain signature 1016 1033 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02519 1208 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 93 275 - -
Trre16g02519 1208 Pfam FERM central domain 353 453 IPR019748 -
Trre16g02519 1208 SMART B41_5 274 453 IPR019749 -
Trre16g02519 1208 FunFam Kinesin-like calmodulin-binding protein 769 1148 - -
Trre16g02519 1208 SUPERFAMILY Second domain of FERM 349 448 IPR035963 -
Trre16g02519 1208 ProSiteProfiles FERM domain profile. 241 547 IPR000299 GO:0005856
Trre16g02519 1208 Pfam MyTH4 domain 167 271 IPR000857 GO:0005856
Trre16g02519 1208 Coils Coil 760 790 - -
Trre16g02519 1208 CDD FERM_B-lobe 354 446 IPR019748 -
Trre16g02519 1208 ProSiteProfiles MyTH4 domain profile. 114 273 IPR000857 GO:0005856
Trre16g02519 1208 Gene3D - 451 559 IPR011993 -
Trre16g02519 1208 MobiDBLite consensus disorder prediction 1 46 - -
Trre16g02519 1208 ProSiteProfiles Kinesin motor domain profile. 825 1146 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02519 1208 Coils Coil 718 745 - -
Trre16g02519 1208 PANTHER KINESIN-LIKE PROTEIN KLP-3 555 1188 IPR027640 GO:0003777|GO:0007018
Trre16g02519 1208 SMART MyTH4_1 114 273 IPR000857 GO:0005856
Trre16g02519 1208 Pfam Kinesin motor domain 831 1146 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g02519 1208 MobiDBLite consensus disorder prediction 1179 1199 - -
Trre16g02519 1208 CDD FERM_C_KCBP 450 551 - -
Trre16g02519 1208 Gene3D MyTH4 domain 92 275 IPR038185 -
Trre16g02519 1208 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 451 560 - -
Trre16g02519 1208 MobiDBLite consensus disorder prediction 1179 1208 - -
Trre16g02519 1208 SMART kinesin_4 823 1154 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02519 Trre-Chr16 20824027 20831440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02519 30 1197 Calmodulin-binding Proteins AT5G65930 67.685 0.0 1673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02519 - - gmx:100807481 1865.51