Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02512 ATGGCGACACACACTGTGGCCATTATCGGTCCGCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAACTCCAGGTTCCTCTATTATCATTTTCAGCAACTGATCCTACTATCTTTGCTTATGACACTGTTTACGTTCTTGCTCGTTCCCTTGATACATTTTTCAAACAAGGGAACCGAATTACATTTTCACGCGATCCAAAGATATCAGAAATAAGTGGAGACAGCTTGCATCTTTGA 249 0.4096 MATHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTIFAYDTVYVLARSLDTFFKQGNRITFSRDPKISEISGDSLHL 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02512 82 SUPERFAMILY Periplasmic binding protein-like I 4 41 IPR028082 -
Trre16g02512 82 Gene3D - 1 41 - -
Trre16g02512 82 Pfam Receptor family ligand binding region 4 40 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02512 Trre-Chr16 20767844 20768092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02512 41 82 Ion Channels AT2G32390 45.238 4.25e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02512 K05387 - gmx:100788917 78.1814