Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02511 ATGGCGACAAACACTGTGGCCATTATCGGTCTGCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAACTCCAGGTTCCTCTATTATCATTTTCAGCAACTGATCCTACTATCTTTGCTTATGACACTGTTTACGTTCTTGCTCGTTCCCTTGATACATTTTTCAAACAAGGGAACCGAATTACATTTTCACGCGATCCAAAGATATCAGAAATAAGTGGAGACAGCTTGCATCTTTGA 249 0.4016 MATNTVAIIGLQTSTTAHVISHIANELQVPLLSFSATDPTIFAYDTVYVLARSLDTFFKQGNRITFSRDPKISEISGDSLHL 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02511 82 Pfam Receptor family ligand binding region 3 40 IPR001828 -
Trre16g02511 82 Gene3D - 1 38 - -
Trre16g02511 82 SUPERFAMILY Periplasmic binding protein-like I 3 41 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02511 Trre-Chr16 20757832 20758080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02511 41 82 Ion Channels AT2G32390 45.238 4.42e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02511 K05387 - gmx:100812261 74.3294