Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02498 ATGGGATCCAATAGTAGCAAAGCCACTTCCACTACTTCGTCTTCTTCAAGGAATTTCAAGAAGAGTTGTTCTAAGGGATTCAAAGGGTTTCACTCTTATTGTCTTGGAACTTTTTCTGGATCTCAAGATAGTGATAACGAAGACAAGGTTTGTGATCAGAATAAAGTACATGGCTGTGATGTTACATTTGCTGATGACAATCTATCTGAATCAGATGAGGTGAAATCAAAGTCTTTTGGAAAGGTTAAAGCTGGTGATAGTGACACTACTTGTATGCCTAACATCAACCTTGATGAGTGCGGTGAAACAAGGATCCCCAACAACACTTCGTCTGGAAGTCGTACCAGTTCTGTTCACGCTTCTTCAACTCATTTGTTGAATGCTACTAATCGATTCCTTTCTTGCTTCGGCATCAGTCCTAGTAATAAAACCTTCAGACTTAGCAGATTTATTGGTTCGAGGTCATCAAGGCCTTGTCCTGTTTCTTCTACAAGTCTCTCAGTATTTGACAATGATGCTGAGCATAATCTACATCCGGGACCTTGTAGCAGTTTGTTTAACAGAAATGAAACTCCGCGGTGTCGTGAAGATACTCCTAATAATTTAAGGTCAAATGTGTCAGGATCAGGTTTGCCTTGCAACATGCAGCGCAATCTCAGCGGTGGCATTGGTGCAAGAGATGAGTTGGATGTAAACTTATTTTCTTCGAGAATTCGAGCGGAGACAGAACATATTGAGACTAGACATGTAGATCGGCGAAACGGAGCTCGAGAGCCAGTTGAGCAGAATGTTCGTTTTAGTCGAACTTTAAGTGTTGGAAGGCTTCGTGACCGGGTTGTTCGTCGATCAACATTATCTGACCTTACCTTTTTCCCTTTACAACAAGAAAGAGAACTGAGAGATGATAGTCAGAATACTCAAAGGCAAGCAGTAGAGGCAGATTCAAGAGTGTCACCATTGGAGCATAGCAATGTTAGTTCTTCTCCATCTAGTATGTCTAACTCCATGTTTAGCAATCAAAACTATGACGTTGAGACCTCACGATTACGAGAAGGTAGGTATCAAGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCACAGGTCCGTTCTCTTCAGCGATTGGGTAGCCGGTATGAAAATCAATCTGCACATGAAAGATCATGTATCTTGTCTGGTCAACATAGAAGTGCTCATTGTATGTGCCGATTAAGAAATCATGACAATAATTCAAATGATGATACCGGTGCTAGAGCTAGTATATCAAGAATTGTTGTACTTGCAGAAGCCTTATTTGAGGTTCTAGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCATCCATCTGTATCTTCTATTGGATCTGTTCCCGCACCTATCAATGTTGTGGAATCATTGCCTGTCAAGTTATATGAGAAGTTGCATAAAGAAGATACTACACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCGTGCGAGTTCTCCCCTGTCATCATGAATTTCATAGAACATGTATAGACAAGTGGTTGAAGGAGATTCACGGGGTATGCCCACTTTGTCGGGGGAACATCTGCATTTCTGGCTCACCGCCAACTCGGAACTTTAGCGACTAG 1644 0.4173 MGSNSSKATSTTSSSSRNFKKSCSKGFKGFHSYCLGTFSGSQDSDNEDKVCDQNKVHGCDVTFADDNLSESDEVKSKSFGKVKAGDSDTTCMPNINLDECGETRIPNNTSSGSRTSSVHASSTHLLNATNRFLSCFGISPSNKTFRLSRFIGSRSSRPCPVSSTSLSVFDNDAEHNLHPGPCSSLFNRNETPRCREDTPNNLRSNVSGSGLPCNMQRNLSGGIGARDELDVNLFSSRIRAETEHIETRHVDRRNGAREPVEQNVRFSRTLSVGRLRDRVVRRSTLSDLTFFPLQQERELRDDSQNTQRQAVEADSRVSPLEHSNVSSSPSSMSNSMFSNQNYDVETSRLREGRYQDLLEHRSNFLERRRRIRSQVRSLQRLGSRYENQSAHERSCILSGQHRSAHCMCRLRNHDNNSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPINVVESLPVKLYEKLHKEDTTQCYICLVEYEDGDSVRVLPCHHEFHRTCIDKWLKEIHGVCPLCRGNICISGSPPTRNFSD 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02498 547 SMART ring_2 489 530 IPR001841 -
Trre16g02498 547 MobiDBLite consensus disorder prediction 1 21 - -
Trre16g02498 547 ProSiteProfiles Zinc finger RING-type profile. 489 531 IPR001841 -
Trre16g02498 547 MobiDBLite consensus disorder prediction 298 338 - -
Trre16g02498 547 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 542 - -
Trre16g02498 547 MobiDBLite consensus disorder prediction 308 338 - -
Trre16g02498 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 535 IPR013083 -
Trre16g02498 547 Pfam Ring finger domain 488 531 IPR001841 -
Trre16g02498 547 FunFam Putative RING zinc finger domain superfamily protein 460 536 - -
Trre16g02498 547 SUPERFAMILY RING/U-box 469 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02498 Trre-Chr16 20581963 20585083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02498 250 535 C3H Transcription Factor Family AT5G45290 62.799 5.34e-109 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02498 - - cam:101492704 697.967