Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02494 ATGCACCAATTGTTAAGTGTTGTGATATGTACACTGCTATTACTAAAATCAGCTGAAGGGGTTACTGTGCCAATCACTTATGTTCAAAGTGCTGTTGCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCCTACCATTTTGATAAGGGATTTGAAGATGGCATTGACAACTGGATTGTTCATTTTGAGGGAGGAGCATGGTGCAACAATGCCACTACTTGCCTTGCCCGAACGAACACTAATAGAGGATCATCGAAGAAAATGGAAACGACACTTATCTTTTCTGGATTTTTTAGTAACAACAAAACGTTTAATCCAGATTTTTACAATTGGAACAGAATCCAGGTTAGGTATTGTGACGGTTCATCATTTACCGGTGATATTGAAGCTGTCGATCCAGCAACCAATTTGTACTATAGAGGAGGAAGAATTTTTGTTGCTGTCATTGAGGATTTACTAGCAAAAGGAATGAAAAATGCTAAAAATGCAATTATCCATGGATGTTCAGCTGGAGGATTGACTACTATTTTACATTGCGATCGCTTCAAAACTTTACTACCTTCAGCAGCTAAAGTTAAATGCGTCTCAGATGCCGGTTATTTTATCAATGTAAAATCTATCTCTGGATCACCACACATTGAACAATTCTACAGTGAAGTTGTTAAAACTCATGGTTCAGCAAAGAATTTGCCTTCATCTTGCACTTCAAGACTCCCACCAGGGCTGTGTTTTTTCCCGGAAAACGTGGCTGCACAAATCAGGACTCCGATTTTCTTTGTAAATGCAGCCTATGATTCATGGCAGATTAGGCACATTTTGGCACCCGGTGTTGCTGATCCCAACGGGACTTGGACGAACTGCAAAATTGATATAACCAAATGTTCACCTAATCAATTAACTACAATACAAGGTTTTAGGACAGATTTCTTAAAGGCAATTAGTGTGATTAATAACTGTCCATCTAAAGGAGCATTTATAGATAGTTGCTATTCCCACTGCCAAACTGGAAATCAGGAAACATGGATGAGTAATGATTCTCCAGTGGTTGCCAATACTACAATAGCAAAGGCAGTAGGAGATTGGTATTTTGAGAGAAGGACTTTTAATCAGATAGATTGTCCTTACCCTTGCAACCCTACATGTCATAAGTCATAA 1158 0.3903 MHQLLSVVICTLLLLKSAEGVTVPITYVQSAVAKGAVCLDGSPPAYHFDKGFEDGIDNWIVHFEGGAWCNNATTCLARTNTNRGSSKKMETTLIFSGFFSNNKTFNPDFYNWNRIQVRYCDGSSFTGDIEAVDPATNLYYRGGRIFVAVIEDLLAKGMKNAKNAIIHGCSAGGLTTILHCDRFKTLLPSAAKVKCVSDAGYFINVKSISGSPHIEQFYSEVVKTHGSAKNLPSSCTSRLPPGLCFFPENVAAQIRTPIFFVNAAYDSWQIRHILAPGVADPNGTWTNCKIDITKCSPNQLTTIQGFRTDFLKAISVINNCPSKGAFIDSCYSHCQTGNQETWMSNDSPVVANTTIAKAVGDWYFERRTFNQIDCPYPCNPTCHKS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02494 385 PANTHER NOTUM-RELATED 11 384 IPR004963 GO:0016787
Trre16g02494 385 Pfam Pectinacetylesterase 17 368 IPR004963 GO:0016787
Trre16g02494 385 SUPERFAMILY alpha/beta-Hydrolases 143 276 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02494 Trre-Chr16 20538000 20541541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02494 1 383 Carbohydrate Esterase AT4G19420 53.828 2.10e-178 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02494 K19882 - gmx:100781246 615.535