Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02489 ATGGCTGACAATGGCGATAATCAACCTTTGTTCAGTACCAAATTTGGTGTGATACTAATTGCTATGGGTTCAGCTAGTTTTGTGGTAACAATGTACCATCTCATAGTCATTTGCTGCCAAAACTCTGCCGAACGTGCGCAGCAACACGACCGAGCAGCAACACAAACACCGAGCGTCGAAGAGGATTGTTTGGGGTCACATCAGATTCCATCCCACAAGTATGAGAAGAAAAAGAATGATGAAGATGATTGTATTACTTGTGCTGTGTGCTTGGGAGACTTTGAGGAGGGTGAGGAGTTAAGAACTATGCCTTCTTGCATGCATTCTTTCCATGTACCATGCATAGATATGTGGCTCATTTCACATTTTAATTGTCCCGTTTGTCGCGCTGATGCCACGCCCTCTCCGGTGGTGTCTCATAGTTTAACGGAGGTTGCATCCGCTGAGGTGAATGTTGATGAAGGCATAAATATTGTGCAAATAGTTGTCATCCAAAATGAGTTGCAAAATGAGTTACCGATAGTTCCATCCTAA 534 0.4363 MADNGDNQPLFSTKFGVILIAMGSASFVVTMYHLIVICCQNSAERAQQHDRAATQTPSVEEDCLGSHQIPSHKYEKKKNDEDDCITCAVCLGDFEEGEELRTMPSCMHSFHVPCIDMWLISHFNCPVCRADATPSPVVSHSLTEVASAEVNVDEGINIVQIVVIQNELQNELPIVPS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02489 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 136 IPR013083 -
Trre16g02489 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 133 IPR044675 -
Trre16g02489 177 CDD RING-H2_EL5-like 87 129 - -
Trre16g02489 177 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Trre16g02489 177 SMART ring_2 87 128 IPR001841 -
Trre16g02489 177 Pfam Ring finger domain 86 129 IPR001841 -
Trre16g02489 177 SUPERFAMILY RING/U-box 68 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02489 Trre-Chr16 20498144 20498677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02489 17 151 C3H Transcription Factor Family AT5G17600 36.184 6.81e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02489 - - lja:Lj0g3v0111029.1 177.563