Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02488 ATGTGTTTGTTTGTTGCTGTCGCTGGATTTGTCGATCATATATGTGTTGCTGAGGAGTCAGTTTTAATGGGCATTGCTGTTGATCATCGCCGCCAAAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGAGGTTGAAAACATACAAGGCCAAATTAGTTGTGTTCCCAAGGCGGGCTCGTAAGGTCAAGGCTGGCGATTCTAGTCCCGAGGAACGAGCAAATGCCACACAAGTTCAGGGTCCATTCTTGCCCATTGTGAGGGAACAGCCATCTGTTGAACTTGTTAAGATTACTGATGAAATGAAGGCATTCAAAGCGTATTATAAGCTTCGTCTTGAACGCACTAATCAACGCCATTTTGGTGCCTGA 372 0.4516 MCLFVAVAGFVDHICVAEESVLMGIAVDHRRQNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSSPEERANATQVQGPFLPIVREQPSVELVKITDEMKAFKAYYKLRLERTNQRHFGA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02488 123 Gene3D - 97 123 - -
Trre16g02488 123 PANTHER 60S RIBOSOMAL PROTEIN L13 23 122 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre16g02488 123 Pfam Ribosomal protein L13e 22 115 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02488 Trre-Chr16 20491568 20497300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02488 23 122 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 79.000 5.94e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02488 K02873 - gmx:100805957 181.415