Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02486 ATGGAGTCTAATGGTGATGCCTCGGTTCGTGAATTTTGTGCAAATGGAACATGCATGAAAACAGCAGAAGTTGAAGCTAAACTCGATCAAGGAAATATTCAAGATGCTGAAACTGCATTAAGAGATGGTTTATCTCTTACTTCTGAGGAAGCAAGAGCTCTTCTCGGAAAATTAGAGTATCAAAGAGGTAATGTTGAAGGTGCTCTTCGTGTGTTTGATGGGGTTGATCTTAAAGCTGCCATACAGCGACTGCAAACTTCCCTTTCGGAAAAGCCACCCGTCAAGAAAGGTCCCACTCGTGCCGAATCACCTTCTTCAGTAACTCAGCATGCTGCTAGTATGGTGCTTGAAGCCATCTATTTAAAAGCCAAGACCCTACAAAAACTGGGGAGATATAACGAAGCTGCTAATGAATGCAAGCAAGTTCTTGATGCTGTTGAGAAGGTATTTTCTCAAGGTATACCTGAAACTCAAGTGGACAATAGATTGCAGGAGATAGTGTGCTGTGCTGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCTGGTTGCTATGCCGAGGCAATAACGGCTTACAGGCACGCCCTTCTCAGTCAATGGAACCTTGATAACGATTGCTGTGCGAGAATTCAGAAAGCTTTTGCAGCATTTTTGCTATACAGCGGGGTGGAGGCAAGTCCACCTAGTTTTTCCGTTCAGATTGAAGGGTCTTATGTACCTAAAAATAATATCGAAGAGGCGATTCTTCTTCTTATGATTATCTTGAGGAAGTGTAGCCTAGGAAAGGCAAAATGGGATCCTTCTGTTATGGAACACCTAACTTTTGCACTTTCAGTTTGTGGTGAAACTTCTATTTTGGCGAAACAATTTCAAGAGTTGATGCCTGGCGTATATCATCGAATTGACCGTTGGAATTCTTTAGCTCTATGTCTTAGTGGTGCTGGACAAAATAAAAGTGCTTTGAATCTGCTAAGGAAGTCTTTGCACAAACATGAACGACCGGATGACTTGATAGCGTTATTATTGGCTGCAAAGATTTGCAGCGAGGATCCTTATCTTGGTGCTGAGGGAGCAGGATATGCACAGAGGGCAATCGATAAAGCTCAAGGCTTAAATGAGCATTTGAAAGGTGTTGGTCTTCGAATGCTCGGACTTTGCCTTGGAAAGCAAGCTAAGGTTGCTTCCTCCGATTTCGAGAGGTCTATGCTTCAGTCAAAAGCTTTGCAATCACTGGAGGATGCAGTTAGATTAGAGCAAAACAATTTTGATCTTATTTTTGAATTGGCTATTCAATATGCTGAACACCGAAATTTGGCTGTTGCTTTACGCTATGCTAAGCAGTTCTTCGACAAAACTGGTGGCTCTAAATTGAATGGTTGGAGATTGCTTTCTCTGGTTTTGTCTGCACAGAAAAGATTTTCAGAGGCTGAAGTTGTTACTGATGCTGCTTTAGATGAGACCTCAAAATGGGAGCAGGGGCCTCTGTTCAGGCTAAAAGCCAAGCTGAAGATCGCTGAATTACGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCTTCTGGACCTCAAACACTTAGTTCACAGGACGAGGATGATAAAATAAGTGAATTTGATGTTTGGCATGGTCTAGCAAATTTATATGCAAGCCTTTCACATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGAGAGTTGAAGGAATACTCGGCAGCAACAATACAAACCGAAGGTGTGGTGTTTGACGGTCATGGACAAAACGATGAAGCTCTAGCGGCTGCTGCTAATGCTGTCCTAGTTGAACCGAGCCATGTTCCAAGCAAGATATTGATGGCTTCTTTGATGCTGAAAAATGGTCCCAGTGCATTACCTGTTTCTAGAAGCATACTTTCTGATGCACTCAGAATAGAACCAACTAACCGCAGTGCTTGGTATTATCTCGGATTAACTCACAAGGATGATGGTCGACTAGCCGATGCTGCTGATTGCTTCCAGGCAGCTGCCATGCTCGAAGAATCTGATCCCATTGAAAGTTTTAGCTCTATGATTTAA 2079 0.4286 MESNGDASVREFCANGTCMKTAEVEAKLDQGNIQDAETALRDGLSLTSEEARALLGKLEYQRGNVEGALRVFDGVDLKAAIQRLQTSLSEKPPVKKGPTRAESPSSVTQHAASMVLEAIYLKAKTLQKLGRYNEAANECKQVLDAVEKVFSQGIPETQVDNRLQEIVCCAVELLPELWKQAGCYAEAITAYRHALLSQWNLDNDCCARIQKAFAAFLLYSGVEASPPSFSVQIEGSYVPKNNIEEAILLLMIILRKCSLGKAKWDPSVMEHLTFALSVCGETSILAKQFQELMPGVYHRIDRWNSLALCLSGAGQNKSALNLLRKSLHKHERPDDLIALLLAAKICSEDPYLGAEGAGYAQRAIDKAQGLNEHLKGVGLRMLGLCLGKQAKVASSDFERSMLQSKALQSLEDAVRLEQNNFDLIFELAIQYAEHRNLAVALRYAKQFFDKTGGSKLNGWRLLSLVLSAQKRFSEAEVVTDAALDETSKWEQGPLFRLKAKLKIAELRPMDAIEIYRYLLALVQAQKKSSGPQTLSSQDEDDKISEFDVWHGLANLYASLSHWKDAEICLQKARELKEYSAATIQTEGVVFDGHGQNDEALAAAANAVLVEPSHVPSKILMASLMLKNGPSALPVSRSILSDALRIEPTNRSAWYYLGLTHKDDGRLADAADCFQAAAMLEESDPIESFSSMI 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02486 692 Pfam Tetratricopeptide repeat 652 684 IPR019734 GO:0005515
Trre16g02486 692 ProSiteProfiles TPR repeat profile. 650 683 IPR019734 GO:0005515
Trre16g02486 692 Gene3D Tetratricopeptide repeat domain 20 200 IPR011990 GO:0005515
Trre16g02486 692 Gene3D Tetratricopeptide repeat domain 630 688 IPR011990 GO:0005515
Trre16g02486 692 Pfam Tetratricopeptide repeat 23 73 - -
Trre16g02486 692 SUPERFAMILY TPR-like 419 681 IPR011990 GO:0005515
Trre16g02486 692 SUPERFAMILY TPR-like 116 441 IPR011990 GO:0005515
Trre16g02486 692 SMART tpr_5 580 613 IPR019734 GO:0005515
Trre16g02486 692 SMART tpr_5 300 333 IPR019734 GO:0005515
Trre16g02486 692 SMART tpr_5 650 683 IPR019734 GO:0005515
Trre16g02486 692 SMART tpr_5 116 149 IPR019734 GO:0005515
Trre16g02486 692 SMART tpr_5 546 579 IPR019734 GO:0005515
Trre16g02486 692 Gene3D Tetratricopeptide repeat domain 284 491 IPR011990 GO:0005515
Trre16g02486 692 PANTHER PROTEIN NPG1 4 689 IPR043376 -
Trre16g02486 692 SUPERFAMILY TPR-like 27 144 IPR011990 GO:0005515
Trre16g02486 692 Gene3D Tetratricopeptide repeat domain 492 629 IPR011990 GO:0005515
Trre16g02486 692 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02486 Trre-Chr16 20487401 20491339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02486 2 692 Calmodulin-binding Proteins AT2G43040 69.784 0.0 967
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02486 K21843 - gmx:100811897 1109.36