Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02483 ATGGAGAAAACAAGATCCACAGATCATGTTGTTCTCTACCTTGACCAACAAAACAACCCTAAACCTTCCACAATGGAAACTGGAAGTCACAACAACAACAACACAGAACCTCATCAAGAGAAGCCCAAACATCCCTTAAGAGCAAAAACCCTTAATCGTTTAAGCTTCTCTAAACCCAAATCTCGAATCCTTGAATACAGTCATCCACACCGCAACCAACTACCTATCGCCGAAGAAGAAGACACTCATTTTTCTTCATACAAGGTCTCTTCTGATGACGAAGATGACAATTATGAATACAAGGAAGAATCAGAGGATGACTACGACGAGGCTTTGCACGATACAAAGTTAAACAACAAAAAGAAAAAATTTAAAGTGAAGTGGAGGCTAGTTTTTGAATGGATACTATTTTTAAACATATTAACATGTTTGCTTTGTTCTCTCATAGCAAAACGCATTAAAAACATGCATCTTTTAGGGTTAGAGGTTTGGAAGTGGTGTTTAATGGCAATGGTCACATTTAGTGGCCGTTTATGTTCAAGTTGGTTAGTTAGTTTCACCGTTTTTTTCATCGAAAGAAACTTCATGTTAAGAGAAAAAGTTTTATATTTCATCTACGGTTTACGAAACAGCATTCGTAATTGTTTATGGTTAGGGCTTGTTTTATTGTCATATTGGAGTGTAGTTTTCGAGGATTTCCAAAAGAAAAACCATAAATTCCTTAACAAAGTGTTTCAAGCACTTGTCGCGGTTTTAATAGGTGCAACAATTTGGCTAGTGAAAATTGTTTTGGTAAAAATGTTAGCATCTTCATTTCACGTGACAACATACTTTGATAGAATGAAAGAGAGTGTTTTTCATCATTATGTGTTGGATGCATTGTCGGGTCCACCGGTTGAAAACGGAGAAGAGATATCGAAAGAGTATCATTTGATGGGATCGAAGACAATGCCTGTGGGCGACGCAAGGTGGAAGAAGATGAAGAGATTTGGTTCGAGGAGGATTGATATGGAGAAGTTGAAGAAACTTAGTATGGAGAGTAATGGTTCTGTTTGGAGTGTTAAAAGGCTTGTTAATTATGTTAGGTCTTCGGGTTTGTCTACTATTTCTAGGACTGTTGATGATTTTGGTAATAGTGAGAGTGAGATTAGTAGTGAATGGGAAGCTAGAAGTTGTGCTCAAAAGATTTTCAACAATGTTGCTAAACCTGGTGCTACGTATATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACTGGCAAGATTAGCAGATCCTCATTTAGAAATTGGGTGATTCGAGCATATTATGAAAGAAAAGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAACAACTTCACAAATTAGCAAGTGCAGTAGTGAGTGTGATAATAATAATTGTGACACTTTTGGTGATGGAAGTGGCTACAATGAAGATAATATTGTTTTGCATCACACAAACTGTTCTAATAGGTGTTGCCTTTCAAGGCACTTGCAAAACTGTCTTGGAAGCTATTATATTTGTGTTTATCATGCACCCTTTTGATATTGGTGACCGTTGTGTTATTGATGGTGTTCAGATGATTGTGGAAGAAATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATATTACCCTAACGCTGTCTTGCTCACTAAGCCAATAAGCAATTTTTATAGGAGTCCAGAGATGTGTGATGCAATTGATTTCACCATTGATGTCACAACTCCTATAGAGACTATCATTACACTCAAGAAATCAATAAAAATGTACATTGAGAGCAAACCAAAGTATTGGAATCCAAAGCACAGTGTGATGGCAAAACAAATAGATCATGTGGACAAGTTAAGGTTGTGTTTATGTGTGCAACACACCATTAACCATCAAAACTATGGTGAGAGAAGCACTAGAATATCAGAGCTCATCTTGGAGTTAAAAAAGATGTTTGAGATTCATGGTATCAAGTATCATCTTCTTCCTCAAGAAATCCATCTCACTCAAATGAATATTGAAAATGGGAGAACCATGTTTCAATCATGA 2109 0.3661 MEKTRSTDHVVLYLDQQNNPKPSTMETGSHNNNNTEPHQEKPKHPLRAKTLNRLSFSKPKSRILEYSHPHRNQLPIAEEEDTHFSSYKVSSDDEDDNYEYKEESEDDYDEALHDTKLNNKKKKFKVKWRLVFEWILFLNILTCLLCSLIAKRIKNMHLLGLEVWKWCLMAMVTFSGRLCSSWLVSFTVFFIERNFMLREKVLYFIYGLRNSIRNCLWLGLVLLSYWSVVFEDFQKKNHKFLNKVFQALVAVLIGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYVLDALSGPPVENGEEISKEYHLMGSKTMPVGDARWKKMKRFGSRRIDMEKLKKLSMESNGSVWSVKRLVNYVRSSGLSTISRTVDDFGNSESEISSEWEARSCAQKIFNNVAKPGATYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVTLLVMEVATMKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMCDAIDFTIDVTTPIETIITLKKSIKMYIESKPKYWNPKHSVMAKQIDHVDKLRLCLCVQHTINHQNYGERSTRISELILELKKMFEIHGIKYHLLPQEIHLTQMNIENGRTMFQS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02483 702 MobiDBLite consensus disorder prediction 1 53 - -
Trre16g02483 702 MobiDBLite consensus disorder prediction 82 104 - -
Trre16g02483 702 MobiDBLite consensus disorder prediction 10 35 - -
Trre16g02483 702 FunFam Predicted mechanosensitive ion channel 532 581 - -
Trre16g02483 702 Pfam Mechanosensitive ion channel 473 678 IPR006685 GO:0016020|GO:0055085
Trre16g02483 702 Gene3D - 532 581 IPR023408 -
Trre16g02483 702 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 18 692 IPR016688 -
Trre16g02483 702 PIRSF Memb_At2g17000 2 701 IPR016688 -
Trre16g02483 702 SUPERFAMILY Sm-like ribonucleoproteins 523 581 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02483 Trre-Chr16 20451427 20457309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02483 19 692 Mechanosensitive Ion Channel Family AT5G12080 42.632 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02483 K22048 - gmx:100813521 1058.13