Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02481 ATGGGCAGTGATGCATTGAGAAGCAAAGAGTACTGTGCGCTGAGAGATTTAGAATTCAATTTTAATGAATATGATGGAACTTTCTCTTTCTGCTTTTGGATTTATTTGATGAATTCTACTACATTTCCTGCTATCATTCTTCATCAGATTCACTCTGACATTTCCGAAAGTGGTCCTTTTCTTGTTATTAACGATAATAAGAGAATCAATGTTTTACCAGTTCTTTACTTACACCAAGAAGCTCCTGTGACTTGCTCCGGTCCTTGGACAGAAGTTCCACATGTTACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAGATTATATTCGGCTTCAAATTAATGGGGACATTGTAGGAGAAAAGTCACTGTCGGAATCCAATTCAAGGAATTTGAAGGATTTACATTTGGCAAATCGTTGTGGAGACATAAGTGGTGTGCAGGGTTATGTCCACAGTTATGAAGGATTCCATACTGTTTCTTCTATCAAAAATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATAGATGAATCGTCTGTCTCTGAGATTGAAGAGGAAAGTGATGGTGTTTGGGGCATTGTTGGTGGCAAAGCATCTTGTCGCAGAAATTTCTCATTAGACGTTGTTTTATCAGATGCATTTGGACAACTTGTAGACAGGGAGGATGAGGTTTTTGCTTCACTTGTGTATGCTGATACGGGGGCTCCAGTGGAGAATACGAGTGAGGACGAAGCACCCCTTTTGTGTAGCTATGATGGAATTGAATTTTCTTCCTTTGAAAGACCCAGCAAGTTTGTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTTTGTTCCAGAATTAGGAAATTATCCTTTCCTTCAGACAAACACCCGTCCAATTCGATGCATCTCCAGGAGCCGTAACACAAAATTATCCACTTTGGTGTGGAAAAAGTCAACCTATGCTCTCCAAAGACTCAATTTGTCACAATCTTCAGCAATTGGTGATGTGTCATTGGAACATGTGAATTCTGGTCATGTAGAAAAAACCAATCCACTGATAAAGCGGTTTAGAGTTGGATTTGACAAGATATCTGTATCAGTTAAGGCCGACCGCCCCACCTTAAAGCAACCTGGTGTCGAATGTAATTCTCATGTATGGCCTGCTAATCAGGTTGATAATGGGTTTCCGACAAGCTCGGATGGGAGATCTCTTAACGTTGAAGAAGCAGATGACGCTCCATCTGAATCATCAGAGAGTATAGGGGAGAGAAATTCACCTTCAAACAGTATGGAATGTAGAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTGGCAGGATTGGCTGAGAGATCTCAGATGCTTAAAGAAATTGCCACATCTGCTTCTGACAAAGAAATTTCAGAGTTGGCTCATAATGTTTCACACTATTCAGGATGTTCCCACCTTGGAAACCAAATATTAATTGCCAAGAGATTGATAGAGGATGGAACTAATCTTTGGTTGGCAATGTCTCCAAGCAATCACCCCGTTCCTTGGGAGAGTGCAGTGTATGAGATTGAAGAACAATTCATGAAGATTGCTTCTTGTGGGTCAAGATCTCTCTCTCATCAGGACTTTGAGACTCTAAGAAAGATTGCTGGATGTCAAGAGTATTTAACACAAGAAAACTTTGAGAAGTTGTGGTGCTGGTTGTACCCTGTAGCTTGTGTAATATCCAGGGACTGGGTAAATCCTATCTGGAATTCCATTTCACCTAAATGGATTGAAGGATTCATCACCAAGGAGGAAGCAGAAGCTTCACTTCAAGGTCCGACAGGATTTCAAGAACCTGGTACTTTTATACTTCGGTTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCTGGTAACCTAATTGTTACTTATGTTGGTAGTGACTACAAACTGCGCCACAGACTACTTTCAACAGATCATATATATGGCTCTGATAATCAAAGAATTGATGTAAAACCATTGCAAGATATGCTACTGGCAGAACCTGAGCTGTCCCGGTTGGGAAGGTAA 2115 0.408 MGSDALRSKEYCALRDLEFNFNEYDGTFSFCFWIYLMNSTTFPAIILHQIHSDISESGPFLVINDNKRINVLPVLYLHQEAPVTCSGPWTEVPHVTVDFEFPLEKWVHVGCEVCPDYIRLQINGDIVGEKSLSESNSRNLKDLHLANRCGDISGVQGYVHSYEGFHTVSSIKNHHLKDPPLKLSIDESSVSEIEEESDGVWGIVGGKASCRRNFSLDVVLSDAFGQLVDREDEVFASLVYADTGAPVENTSEDEAPLLCSYDGIEFSSFERPSKFVLGRASFKLRISQLSSKCDNRLFLIRFFVPELGNYPFLQTNTRPIRCISRSRNTKLSTLVWKKSTYALQRLNLSQSSAIGDVSLEHVNSGHVEKTNPLIKRFRVGFDKISVSVKADRPTLKQPGVECNSHVWPANQVDNGFPTSSDGRSLNVEEADDAPSESSESIGERNSPSNSMECRRYPISDMTIFKYCLAGLAERSQMLKEIATSASDKEISELAHNVSHYSGCSHLGNQILIAKRLIEDGTNLWLAMSPSNHPVPWESAVYEIEEQFMKIASCGSRSLSHQDFETLRKIAGCQEYLTQENFEKLWCWLYPVACVISRDWVNPIWNSISPKWIEGFITKEEAEASLQGPTGFQEPGTFILRFPTSRSWPHPDAGNLIVTYVGSDYKLRHRLLSTDHIYGSDNQRIDVKPLQDMLLAEPELSRLGR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02481 704 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 149 IPR013320 -
Trre16g02481 704 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 15 700 IPR001217 GO:0003700|GO:0006355|GO:0007165
Trre16g02481 704 Gene3D SH2 domain 599 702 IPR036860 -
Trre16g02481 704 MobiDBLite consensus disorder prediction 439 453 - -
Trre16g02481 704 SUPERFAMILY SH2 domain 606 673 IPR036860 -
Trre16g02481 704 MobiDBLite consensus disorder prediction 399 453 - -
Trre16g02481 704 MobiDBLite consensus disorder prediction 407 424 - -
Trre16g02481 704 ProSiteProfiles Src homology 2 (SH2) domain profile. 611 668 IPR000980 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02481 Trre-Chr16 20429432 20439469 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Trre16g02481 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02481 - - cam:101502730 1140.56